myRT

myRT report for GCA_002219285.1_ASM221928v1

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Seq: CP015278.1 Mycobacterium chimaera strain DSM 44623 chromosome, complete genome (5865644 bp)
Overview 1 RT 1: 873594-878668 bp 2 RT 2: 951020-956872 bp 3 RT 3: 2108239-2114994 bp Neighborhood of RT #1 [873594, 878829] IS285 RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [951020, 956883] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #3 [2108239, 2115005] COG3462 RVT-GII GIIM NuoN NuoM Feature: gene Location: 873594-874022 bp Ori: ASL07633.1 Feature: domain Description: IS285 Location: 873657-873894 bp Feature: domain Description: IS285 Location: 873657-873894 bp Feature: gene Location: 874388-874714 bp Feature: gene Location: 875091-876878 bp Ori: ASL07635.1 Feature: domain Description: RVT_N Location: 875121-875358 bp Feature: domain Description: RVT_N Location: 8751 21 -875358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875418-876078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87541 8-876078 bp Feature: domain Description: GIIM Note: maturase Location: 876147-876378 bp Feature: domain Description: GIIM Note: maturase Location: 8761 47-876378 bp Feature: gene Location: 877004-877651 bp Feature: gene Location: 877591-878829 bp Ori: ASL07637.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 877603-878074 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 877603-878074 bp Feature: domain Description: Transposase_20 Location: 878416-878668 bp Feature: domain Description: Transposase_20 Location: 87841 6-878668 bp Feature: gene Location: 951020-951916 bp Ori: ASL07706.1 Feature: domain Description: MhpC Location: 951044-951896 bp Feature: domain Description: MhpC Location: 951 044-951 896 bp Feature: gene Location: 951964-952179 bp Feature: gene Location: 952709-954157 bp Ori: ASL07708.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953027-953714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953027-95371 4 bp Feature: domain Description: GIIM Note: maturase Location: 953789-953984 bp Feature: domain Description: GIIM Note: maturase Location: 953789-953984 bp Feature: gene Location: 954970-955494 bp Ori: ASL07709.1 Feature: domain Description: TetR_N Location: 954973-955054 bp Feature: domain Description: TetR_N Location: 954973-955054 bp Feature: domain Description: TetR_C_35 Location: 955123-955456 bp Feature: domain Description: TetR_C_35 Location: 9551 23-955456 bp Feature: gene Location: 955582-956883 bp Ori: ASL07710.1 Feature: domain Description: CypX Location: 955657-956872 bp Feature: domain Description: CypX Location: 955657-956872 bp Feature: gene Location: 2108239-2108502 bp Ori: ASL08764.1 Feature: domain Description: COG3462 Location: 2108263-2108482 bp Feature: domain Description: COG3462 Location: 21 08263-21 08482 bp Feature: gene Location: 2108638-2108787 bp Feature: gene Location: 2109566-2111038 bp Ori: ASL08766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2109908-2110604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 09908-21 1 0604 bp Feature: domain Description: GIIM Note: maturase Location: 2110673-2110886 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 0673-21 1 0886 bp Feature: gene Location: 2112093-2113511 bp Ori: ASL08767.1 Feature: domain Description: NuoN Location: 2112126-2113497 bp Feature: domain Description: NuoN Location: 21 1 21 26-21 1 3497 bp Feature: gene Location: 2113515-2115005 bp Ori: ASL08768.1 Feature: domain Description: NuoM Location: 2113518-2114994 bp Feature: domain Description: NuoM Location: 21 1 351 8-21 1 4994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)
COG3462 (Uncharacterized membrane protein ), NuoN (COG1007), NuoM (COG1008)