myRT

myRT report for GCA_002221505.1_ASM222150v1

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Seq: CP011036.1 Pseudoalteromonas nigrifaciens strain KMM 661 chromosome I, complete sequence (3521200 bp)
Overview 1 RT 1: 600108-608086 bp 2 RT 2: 664371-669551 bp 3 RT 3: 1240065-1244716 bp 4 RT 4: 1559725-1566713 bp 5 RT 5: 1721138-1725581 bp 6 RT 6: 1784345-1787110 bp 7 RT 7: 1973442-1978424 bp 8 RT 8: 2309318-2316825 bp 9 RT 9: 2476693-2483809 bp 10 RT 10: 2490528-2496339 bp 11 RT 11: 2890540-2896675 bp 12 RT 12: 3205122-3213369 bp 13 RT 13: 3217063-3222533 bp Neighborhood of RT #1 [600108, 608097] lysS RVT-GII GIIM DUF1343 PRK03642 Neighborhood of RT #2 [664371, 669551] AraC_N GlxA YqdH RVT-GII GIIM HTH_CadR-PbrR Neighborhood of RT #3 [1240065, 1244716] EAL group_II_RT_mat RVT-GII GIIM PRK11059 Neighborhood of RT #4 [1559725, 1566763] ScpB PRK10700 RVT-GII GIIM PRK08945 lipase_Pla1_cef Neighborhood of RT #5 [1721138, 1725616] integrase_gron RVT-GII GIIM group_II_RT_mat 45_DOPA_Dioxygenase Neighborhood of RT #6 [1784345, 1787110] RVT-UG11 Neighborhood of RT #7 [1973442, 1978429] group_II_RT_mat RVT-GII GIIM T5orf172 PRK05431 Neighborhood of RT #8 [2309318, 2316980] agcS Pepdidase_M14_N M14_PaCCP-like RVT-GII GIIM PRK08289 DUF2989 Neighborhood of RT #9 [2476693, 2483817] PRK10664 PRK10787 RVT-GII GIIM clpX clpP Neighborhood of RT #10 [2490528, 2496353] MiaE DUF1282 RVT-GII GIIM PRK09246 PRK10845 Neighborhood of RT #11 [2890540, 2896683] dnstrm_HI1420 RVT-GII GIIM PRK05367 PRK01202 Neighborhood of RT #12 [3205122, 3213374] PRK13107 PRK08999 RVT-GII GIIM PepO COG4701 Neighborhood of RT #13 [3217063, 3222601] DUF2489 PRK05244 RVT-GII GIIM CytC553 Cytochrome_CBB3 engB Feature: gene Location: 600108-601643 bp Ori: ASM52916.1 Gene: lysS Feature: domain Description: lysS Location: 600129-601635 bp Feature: domain Description: lysS Location: 6001 29-601 635 bp Feature: gene Location: 601837-602016 bp Feature: gene Location: 603695-604969 bp Ori: ASM52918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603908-604526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603908-604526 bp Feature: domain Description: GIIM Note: maturase Location: 604574-604793 bp Feature: domain Description: GIIM Note: maturase Location: 604574-604793 bp Feature: gene Location: 605250-606425 bp Ori: ASM52919.1 Feature: domain Description: DUF1343 Location: 605397-606420 bp Feature: domain Description: DUF1 343 Location: 605397-606420 bp Feature: gene Location: 606436-608097 bp Ori: ASM52920.1 Feature: domain Description: PRK03642 Location: 606880-608086 bp Feature: domain Description: PRK03642 Location: 606880-608086 bp Feature: gene Location: 664371-665372 bp Ori: ASM52975.1 Feature: domain Description: AraC_N Location: 664572-665031 bp Feature: domain Description: AraC_N Location: 664572-665031 bp Feature: domain Description: GlxA Location: 665034-665364 bp Feature: domain Description: GlxA Location: 665034-665364 bp Feature: gene Location: 665440-666585 bp Ori: ASM52976.1 Gene: yqhD Feature: domain Description: YqdH Location: 665446-666577 bp Feature: domain Description: YqdH Location: 665446-666577 bp Feature: gene Location: 667373-668647 bp Ori: ASM52977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667586-668204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667586-668204 bp Feature: domain Description: GIIM Note: maturase Location: 668252-668471 bp Feature: domain Description: GIIM Note: maturase Location: 668252-668471 bp Feature: gene Location: 668747-669133 bp Ori: ASM52978.1 Feature: domain Description: HTH_CadR-PbrR Location: 668750-669125 bp Feature: domain Description: HTH_CadR-PbrR Location: 668750-6691 25 bp Feature: gene Location: 669231-669551 bp Feature: gene Location: 1240065-1240364 bp Ori: ASM53537.1 Feature: domain Description: EAL Location: 1240071-1240353 bp Feature: domain Description: EAL Location: 1 240071 -1 240353 bp Feature: gene Location: 1240943-1241293 bp Ori: ASM53538.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1241069-1241270 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 241 069-1 241 270 bp Feature: gene Location: 1241290-1242297 bp Ori: ASM53539.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241293-1241860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 293-1 241 860 bp Feature: domain Description: GIIM Note: maturase Location: 1241899-1242118 bp Feature: domain Description: GIIM Note: maturase Location: 1 241 899-1 2421 1 8 bp Feature: gene Location: 1242285-1243976 bp Ori: ASM53540.1 Feature: domain Description: PRK11059 Location: 1242975-1243884 bp Feature: domain Description: PRK1 1 059 Location: 1 242975-1 243884 bp Feature: gene Location: 1244597-1244716 bp Feature: gene Location: 1559725-1560315 bp Ori: ASM53883.1 Gene: scpB Feature: domain Description: ScpB Location: 1559755-1560268 bp Feature: domain Description: ScpB Location: 1 559755-1 560268 bp Feature: gene Location: 1560312-1561184 bp Ori: ASM53884.1 Gene: rluB Feature: domain Description: PRK10700 Location: 1560330-1561164 bp Feature: domain Description: PRK1 0700 Location: 1 560330-1 561 1 64 bp Feature: gene Location: 1561993-1563267 bp Ori: ASM53885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1562206-1562824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 562206-1 562824 bp Feature: domain Description: GIIM Note: maturase Location: 1562872-1563091 bp Feature: domain Description: GIIM Note: maturase Location: 1 562872-1 563091 bp Feature: gene Location: 1563381-1564127 bp Ori: ASM53886.1 Feature: domain Description: PRK08945 Location: 1563390-1564122 bp Feature: domain Description: PRK08945 Location: 1 563390-1 5641 22 bp Feature: gene Location: 1564334-1566763 bp Ori: ASM53887.1 Feature: domain Description: lipase_Pla1_cef Location: 1564337-1566713 bp Feature: domain Description: lipase_Pla1 _cef Location: 1 564337-1 56671 3 bp Feature: gene Location: 1721138-1722064 bp Ori: ASM54017.1 Feature: domain Description: integrase_gron Location: 1721141-1722062 bp Feature: domain Description: integrase_gron Location: 1 721 1 41 -1 722062 bp Feature: gene Location: 1722346-1722732 bp Feature: gene Location: 1722801-1723808 bp Ori: ASM54019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1722804-1723371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 722804-1 723371 bp Feature: domain Description: GIIM Note: maturase Location: 1723410-1723629 bp Feature: domain Description: GIIM Note: maturase Location: 1 72341 0-1 723629 bp Feature: gene Location: 1723805-1724155 bp Ori: ASM54020.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1723931-1724132 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 723931 -1 7241 32 bp Feature: gene Location: 1724816-1725616 bp Ori: ASM54021.1 Feature: domain Description: 45_DOPA_Dioxygenase Location: 1724837-1725581 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 1 724837-1 725581 bp Feature: gene Location: 1784345-1784824 bp Feature: gene Location: 1785054-1785206 bp Feature: gene Location: 1785203-1785970 bp Ori: ASM54098.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1785335-1785785 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 785335-1 785785 bp Feature: gene Location: 1786182-1786547 bp Feature: gene Location: 1786982-1787110 bp Feature: gene Location: 1973442-1973645 bp Feature: gene Location: 1974568-1974918 bp Ori: ASM54272.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1974694-1974895 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 974694-1 974895 bp Feature: gene Location: 1974915-1975922 bp Ori: ASM54273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1974918-1975485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97491 8-1 975485 bp Feature: domain Description: GIIM Note: maturase Location: 1975524-1975743 bp Feature: domain Description: GIIM Note: maturase Location: 1 975524-1 975743 bp Feature: gene Location: 1975997-1976647 bp Ori: ASM54274.1 Feature: domain Description: T5orf172 Location: 1976249-1976429 bp Feature: domain Description: T5orf1 72 Location: 1 976249-1 976429 bp Feature: gene Location: 1977125-1978429 bp Ori: ASM54275.1 Gene: serS Feature: domain Description: PRK05431 Location: 1977128-1978424 bp Feature: domain Description: PRK05431 Location: 1 9771 28-1 978424 bp Feature: gene Location: 2309318-2310985 bp Ori: ASM54565.1 Feature: domain Description: agcS Location: 2309381-2310953 bp Feature: domain Description: agcS Location: 2309381 -231 0953 bp Feature: gene Location: 2311134-2312261 bp Ori: ASM54566.1 Feature: domain Description: Pepdidase_M14_N Location: 2311143-2311461 bp Feature: domain Description: Pepdidase_M1 4_N Location: 231 1 1 43-231 1 461 bp Feature: domain Description: M14_PaCCP-like Location: 2311470-2312235 bp Feature: domain Description: M1 4_PaCCP-like Location: 231 1 470-231 2235 bp Feature: gene Location: 2312485-2313759 bp Ori: ASM54567.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312698-2313319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 2698-231 331 9 bp Feature: domain Description: GIIM Note: maturase Location: 2313364-2313583 bp Feature: domain Description: GIIM Note: maturase Location: 231 3364-231 3583 bp Feature: gene Location: 2314538-2315980 bp Ori: ASM54568.1 Gene: gapA Feature: domain Description: PRK08289 Location: 2314559-2315975 bp Feature: domain Description: PRK08289 Location: 231 4559-231 5975 bp Feature: gene Location: 2316180-2316980 bp Ori: ASM54569.1 Feature: domain Description: DUF2989 Location: 2316222-2316825 bp Feature: domain Description: DUF2989 Location: 231 6222-231 6825 bp Feature: gene Location: 2476693-2476965 bp Ori: ASM54709.1 Gene: hupB Feature: domain Description: PRK10664 Location: 2476696-2476963 bp Feature: domain Description: PRK1 0664 Location: 2476696-2476963 bp Feature: gene Location: 2477172-2479532 bp Ori: ASM54710.1 Gene: lon Feature: domain Description: PRK10787 Location: 2477175-2479512 bp Feature: domain Description: PRK1 0787 Location: 24771 75-247951 2 bp Feature: gene Location: 2479728-2481002 bp Ori: ASM54711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479941-2480562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479941 -2480562 bp Feature: domain Description: GIIM Note: maturase Location: 2480607-2480826 bp Feature: domain Description: GIIM Note: maturase Location: 2480607-2480826 bp Feature: gene Location: 2481784-2483067 bp Ori: ASM54712.1 Gene: clpX Feature: domain Description: clpX Location: 2481814-2483029 bp Feature: domain Description: clpX Location: 2481 81 4-2483029 bp Feature: gene Location: 2483200-2483817 bp Ori: ASM54713.1 Gene: clpP Feature: domain Description: clpP Location: 2483230-2483809 bp Feature: domain Description: clpP Location: 2483230-2483809 bp Feature: gene Location: 2490528-2491304 bp Ori: ASM54721.1 Gene: miaE Feature: domain Description: MiaE Location: 2490552-2491281 bp Feature: domain Description: MiaE Location: 2490552-2491 281 bp Feature: gene Location: 2491519-2492118 bp Ori: ASM54722.1 Feature: domain Description: DUF1282 Location: 2491546-2492059 bp Feature: domain Description: DUF1 282 Location: 2491 546-2492059 bp Feature: gene Location: 2492255-2493529 bp Ori: ASM54723.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492468-2493089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492468-2493089 bp Feature: domain Description: GIIM Note: maturase Location: 2493134-2493353 bp Feature: domain Description: GIIM Note: maturase Location: 24931 34-2493353 bp Feature: gene Location: 2494314-2495840 bp Ori: ASM54724.1 Gene: purF Feature: domain Description: PRK09246 Location: 2494317-2495793 bp Feature: domain Description: PRK09246 Location: 249431 7-2495793 bp Feature: gene Location: 2495859-2496353 bp Ori: ASM54725.1 Gene: cvpA Feature: domain Description: PRK10845 Location: 2495862-2496339 bp Feature: domain Description: PRK1 0845 Location: 2495862-2496339 bp Feature: gene Location: 2890540-2890824 bp Ori: ASM55085.1 Feature: domain Description: dnstrm_HI1420 Location: 2890555-2890813 bp Feature: domain Description: dnstrm_HI1 420 Location: 2890555-289081 3 bp Feature: gene Location: 2890894-2891010 bp Feature: gene Location: 2891149-2892423 bp Ori: ASM55087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891362-2891983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891 362-2891 983 bp Feature: domain Description: GIIM Note: maturase Location: 2892028-2892247 bp Feature: domain Description: GIIM Note: maturase Location: 2892028-2892247 bp Feature: gene Location: 2893238-2896129 bp Ori: ASM55088.1 Gene: gcvP Feature: domain Description: PRK05367 Location: 2893262-2896121 bp Feature: domain Description: PRK05367 Location: 2893262-28961 21 bp Feature: gene Location: 2896294-2896683 bp Ori: ASM55089.1 Gene: gcvH Feature: domain Description: PRK01202 Location: 2896297-2896675 bp Feature: domain Description: PRK01 202 Location: 2896297-2896675 bp Feature: gene Location: 3205122-3207830 bp Ori: ASM55386.1 Gene: secA Feature: domain Description: PRK13107 Location: 3205125-3207825 bp Feature: domain Description: PRK1 31 07 Location: 32051 25-3207825 bp Feature: gene Location: 3207903-3208301 bp Ori: ASM55387.1 Gene: mutT Feature: domain Description: PRK08999 Location: 3207918-3208287 bp Feature: domain Description: PRK08999 Location: 320791 8-3208287 bp Feature: gene Location: 3208464-3209738 bp Ori: ASM55388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208677-3209298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208677-3209298 bp Feature: domain Description: GIIM Note: maturase Location: 3209343-3209562 bp Feature: domain Description: GIIM Note: maturase Location: 3209343-3209562 bp Feature: gene Location: 3210555-3212627 bp Ori: ASM55389.1 Feature: domain Description: PepO Location: 3210684-3212625 bp Feature: domain Description: PepO Location: 321 0684-321 2625 bp Feature: gene Location: 3212895-3213374 bp Ori: ASM55390.1 Feature: domain Description: COG4701 Location: 3212952-3213369 bp Feature: domain Description: COG4701 Location: 321 2952-321 3369 bp Feature: gene Location: 3217063-3217578 bp Ori: ASM55394.1 Feature: domain Description: DUF2489 Location: 3217111-3217528 bp Feature: domain Description: DUF2489 Location: 321 71 1 1 -321 7528 bp Feature: gene Location: 3217592-3218176 bp Ori: ASM55395.1 Feature: domain Description: PRK05244 Location: 3217610-3218141 bp Feature: domain Description: PRK05244 Location: 321 761 0-321 81 41 bp Feature: gene Location: 3218944-3220218 bp Ori: ASM55396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3219157-3219778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 91 57-321 9778 bp Feature: domain Description: GIIM Note: maturase Location: 3219823-3220042 bp Feature: domain Description: GIIM Note: maturase Location: 321 9823-3220042 bp Feature: gene Location: 3221033-3221665 bp Ori: ASM55397.1 Feature: domain Description: CytC553 Location: 3221036-3221420 bp Feature: domain Description: CytC553 Location: 3221 036-3221 420 bp Feature: domain Description: Cytochrome_CBB3 Location: 3221450-3221651 bp Feature: domain Description: Cytochrome_CBB3 Location: 3221 450-3221 651 bp Feature: gene Location: 3221933-3222601 bp Ori: ASM55398.1 Gene: engB Feature: domain Description: engB Location: 3221951-3222533 bp Feature: domain Description: engB Location: 3221 951 -3222533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lysS (PRK02983), RVT-GII, GIIM (pfam08388), DUF1343 (pfam07075), PRK03642 (putative periplasmic esterase; Provisional), AraC_N (pfam06719), GlxA (COG4977), YqdH (COG1979), HTH_CadR-PbrR (cd04784), EAL (smart00052)
group_II_RT_mat (TIGR04416), PRK11059 (regulatory protein CsrD; Provisional), ScpB (COG1386), PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), PRK08945 (putative oxoacyl-(acyl carrier protein) reductase; Provisional), lipase_Pla1_cef (TIGR03502), integrase_gron (TIGR02249), 45_DOPA_Dioxygenase (cd07363), RVT-UG11, T5orf172 (smart00974)
PRK05431 (seryl-tRNA synthetase; Provisional), agcS (TIGR00835), Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), PRK08289 (glyceraldehyde-3-phosphate dehydrogenase; Reviewed), DUF2989 (pfam11207), PRK10664 (DNA-binding protein HU-beta), PRK10787 (DNA-binding ATP-dependent protease La; Provisional), clpX, clpP
MiaE (pfam06175), DUF1282 (pfam06930), PRK09246 (amidophosphoribosyltransferase; Provisional), PRK10845 (colicin V production protein; Provisional), dnstrm_HI1420 (TIGR02684), PRK05367 (aminomethyl-transferring glycine dehydrogenase), PRK01202 (glycine cleavage system protein GcvH), PRK13107 (preprotein translocase subunit SecA; Reviewed), PRK08999 (Nudix family hydrolase), PepO (COG3590)
COG4701 (Uncharacterized protein ), DUF2489 (pfam10675), PRK05244 (Der GTPase-activating protein YihI), CytC553 (COG2863), Cytochrome_CBB3 (pfam13442), engB (PRK00454)