myRT

myRT report for GCA_002222655.1_ASM222265v1

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Seq: CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome (3464895 bp)
Overview 1 RT 1: 1017659-1025592 bp 2 RT 2: 1192481-1199368 bp 3 RT 3: 1389404-1393496 bp 4 RT 4: 2205583-2209581 bp 5 RT 5: 2349072-2352955 bp 6 RT 6: 2355684-2362653 bp 7 RT 7: 3331774-3337081 bp Neighborhood of RT #1 [1017659, 1025592] HTH_MlrA-CarA RVT-GII GIIM MtbC1 Neighborhood of RT #2 [1192481, 1199448] PRK10665 ChlI RVT-GII GIIM YifB GT4_ExpE7-like Neighborhood of RT #3 [1389404, 1393519] RVT-Retrons PBP2_GcdR_TrpI_HvrB_AmpR_like DctP Neighborhood of RT #4 [2205583, 2209581] DUF1887 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #5 [2349072, 2353140] AAA_15 AAA_15 TOPRIM_OLD RVT-GII GIIM Neighborhood of RT #6 [2355684, 2362838] RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #7 [3331774, 3337104] ERG3 AcrR RVT-GII GIIM Chrome_Resist Feature: gene Location: 1017659-1017970 bp Feature: gene Location: 1018127-1018621 bp Ori: ASM76728.1 Feature: domain Description: HTH_MlrA-CarA Location: 1018163-1018358 bp Feature: domain Description: HTH_MlrA-CarA Location: 1 01 81 63-1 01 8358 bp Feature: gene Location: 1018582-1020333 bp Ori: ASM76729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019278-1019896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 9278-1 01 9896 bp Feature: domain Description: GIIM Note: maturase Location: 1019935-1020148 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 9935-1 0201 48 bp Feature: gene Location: 1020446-1021075 bp Ori: ASM76730.1 Feature: domain Description: MtbC1 Location: 1020548-1020887 bp Feature: domain Description: MtbC1 Location: 1 020548-1 020887 bp Feature: gene Location: 1021081-1025592 bp Feature: gene Location: 1192481-1192819 bp Ori: ASM76901.1 Feature: domain Description: PRK10665 Location: 1192484-1192817 bp Feature: domain Description: PRK1 0665 Location: 1 1 92484-1 1 9281 7 bp Feature: gene Location: 1193154-1193573 bp Ori: ASM76902.1 Feature: domain Description: ChlI Location: 1193163-1193424 bp Feature: domain Description: ChlI Location: 1 1 931 63-1 1 93424 bp Feature: gene Location: 1193534-1195285 bp Ori: ASM76903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194230-1194848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 94230-1 1 94848 bp Feature: domain Description: GIIM Note: maturase Location: 1194887-1195100 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94887-1 1 951 00 bp Feature: gene Location: 1195398-1196645 bp Ori: ASM76904.1 Feature: domain Description: YifB Location: 1195407-1196622 bp Feature: domain Description: YifB Location: 1 1 95407-1 1 96622 bp Feature: gene Location: 1196833-1199448 bp Ori: ASM76905.1 Feature: domain Description: GT4_ExpE7-like Location: 1198597-1199368 bp Feature: domain Description: GT4_ExpE7-like Location: 1 1 98597-1 1 99368 bp Feature: gene Location: 1389404-1389781 bp Feature: gene Location: 1389931-1390143 bp Feature: gene Location: 1390247-1391452 bp Ori: ASM77099.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1390421-1390988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 390421 -1 390988 bp Feature: gene Location: 1391977-1392579 bp Ori: ASM77100.1 Feature: domain Description: PBP2_GcdR_TrpI_HvrB_AmpR_like Location: 1391983-1392481 bp Feature: domain Description: PBP2_GcdR_TrpI_HvrB_AmpR_like Location: 1 391 983-1 392481 bp Feature: gene Location: 1392539-1393519 bp Ori: ASM77101.1 Feature: domain Description: DctP Location: 1392545-1393496 bp Feature: domain Description: DctP Location: 1 392545-1 393496 bp Feature: gene Location: 2205583-2206044 bp Ori: ASM77903.1 Feature: domain Description: DUF1887 Location: 2205676-2205913 bp Feature: domain Description: DUF1 887 Location: 2205676-220591 3 bp Feature: gene Location: 2206772-2206897 bp Feature: gene Location: 2206956-2208995 bp Ori: ASM77905.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2207178-2207766 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22071 78-2207766 bp Feature: domain Description: Cas1_I-II-III Location: 2207994-2208957 bp Feature: domain Description: Cas1 _I-II-III Location: 2207994-2208957 bp Feature: gene Location: 2209021-2209287 bp Ori: ASM77906.1 Feature: domain Description: Cas2_I_II_III Location: 2209024-2209246 bp Feature: domain Description: Cas2_I_II_III Location: 2209024-2209246 bp Feature: gene Location: 2209441-2209581 bp Feature: gene Location: 2349072-2349272 bp Feature: gene Location: 2349422-2351263 bp Ori: ASM78032.1 Feature: domain Description: AAA_15 Location: 2349446-2349623 bp Feature: domain Description: AAA_1 5 Location: 2349446-2349623 bp Feature: domain Description: AAA_15 Location: 2349923-2350505 bp Feature: domain Description: AAA_1 5 Location: 2349923-2350505 bp Feature: domain Description: TOPRIM_OLD Location: 2350670-2350919 bp Feature: domain Description: TOPRIM_OLD Location: 2350670-235091 9 bp Feature: gene Location: 2351389-2353140 bp Ori: ASM78033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352085-2352703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352085-2352703 bp Feature: domain Description: GIIM Note: maturase Location: 2352742-2352955 bp Feature: domain Description: GIIM Note: maturase Location: 2352742-2352955 bp Feature: gene Location: 2355684-2356661 bp Ori: ASM78034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355687-2356224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355687-2356224 bp Feature: domain Description: GIIM Note: maturase Location: 2356263-2356476 bp Feature: domain Description: GIIM Note: maturase Location: 2356263-2356476 bp Feature: gene Location: 2358386-2360137 bp Ori: ASM78035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359082-2359700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359082-2359700 bp Feature: domain Description: GIIM Note: maturase Location: 2359739-2359952 bp Feature: domain Description: GIIM Note: maturase Location: 2359739-2359952 bp Feature: gene Location: 2361087-2362838 bp Ori: ASM78036.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2361783-2362401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2361 783-2362401 bp Feature: domain Description: GIIM Note: maturase Location: 2362440-2362653 bp Feature: domain Description: GIIM Note: maturase Location: 2362440-2362653 bp Feature: gene Location: 3331774-3332604 bp Ori: ASM78917.1 Feature: domain Description: ERG3 Location: 3331861-3332485 bp Feature: domain Description: ERG3 Location: 3331 861 -3332485 bp Feature: gene Location: 3332783-3333223 bp Ori: ASM78918.1 Feature: domain Description: AcrR Location: 3332792-3333215 bp Feature: domain Description: AcrR Location: 3332792-333321 5 bp Feature: gene Location: 3333914-3335602 bp Ori: ASM78919.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334547-3335165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334547-33351 65 bp Feature: domain Description: GIIM Note: maturase Location: 3335210-3335417 bp Feature: domain Description: GIIM Note: maturase Location: 333521 0-333541 7 bp Feature: gene Location: 3335919-3336113 bp Feature: gene Location: 3336166-3337104 bp Ori: ASM78921.1 Feature: domain Description: Chrome_Resist Location: 3336700-3337081 bp Feature: domain Description: Chrome_Resist Location: 3336700-3337081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MlrA-CarA (cd01104), RVT-GII, GIIM (pfam08388), MtbC1 (COG5012), PRK10665 (P-II family nitrogen regulator), ChlI (pfam13541), YifB (COG0606), GT4_ExpE7-like (cd03823), RVT-Retrons, PBP2_GcdR_TrpI_HvrB_AmpR_like (cd08432)
DctP (pfam03480), DUF1887 (pfam09002), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), ERG3 (COG3000), AcrR (COG1309), Chrome_Resist (pfam09828)