myRT

myRT report for GCA_002234495.1_ASM223449v1

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Seq: CP022515.1 Arenibacter algicola strain SMS7 chromosome, complete genome (5793053 bp)
Overview 1 RT 1: 1863507-1871739 bp 2 RT 2: 1936951-1942697 bp 3 RT 3: 2098743-2102900 bp 4 RT 4: 2286853-2290759 bp 5 RT 5: 2298979-2303664 bp 6 RT 6: 2309674-2314771 bp 7 RT 7: 2626907-2636863 bp 8 RT 8: 4315110-4321532 bp 9 RT 9: 4330493-4335374 bp 10 RT 10: 4341523-4346412 bp 11 RT 11: 5210419-5216731 bp Neighborhood of RT #1 [1863507, 1871801] SusD YwqK RVT-GII GIIM AcrB Neighborhood of RT #2 [1936951, 1942999] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII GIIM HTH_LUXR DUF975 Neighborhood of RT #3 [2098743, 2102900] Abi_C RVT-GII GIIM Neighborhood of RT #4 [2286853, 2290759] RVT-GII GIIM Neighborhood of RT #5 [2298979, 2303664] RVT-GII GIIM Neighborhood of RT #6 [2309674, 2314845] SppA RVT-GII GIIM nitrilase_7 Neighborhood of RT #7 [2626907, 2636895] zf-ISL3 RVT-GII GIIM TauE Nodulin-21_like_1 DEDD_Tnp_IS110 COG3547 RVT-GII GIIM 45_DOPA_Dioxygenase TMR_SDR_a Neighborhood of RT #8 [4315110, 4321543] SnoaL SGL SGL RVT-GII GIIM CHASE Neighborhood of RT #9 [4330493, 4335454] InsE YdiL RVT-GII GIIM COG3547 Neighborhood of RT #10 [4341523, 4346447] THN_reductase-like_SDR_c TMR_SDR_a RVT-GII GIIM DUF488 Neighborhood of RT #11 [5210419, 5216745] DUF2207 LemA RVT-GII GIIM SnoaL_2 SnoaL_2 YhaK Feature: gene Location: 1863507-1864787 bp Ori: ASO05058.1 Feature: domain Description: SusD Location: 1863813-1864704 bp Feature: domain Description: SusD Location: 1 86381 3-1 864704 bp Feature: gene Location: 1864996-1865346 bp Ori: ASO05059.1 Feature: domain Description: YwqK Location: 1865098-1865314 bp Feature: domain Description: YwqK Location: 1 865098-1 86531 4 bp Feature: gene Location: 1865809-1867215 bp Ori: ASO05060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866148-1866766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8661 48-1 866766 bp Feature: domain Description: GIIM Note: maturase Location: 1866817-1867036 bp Feature: domain Description: GIIM Note: maturase Location: 1 86681 7-1 867036 bp Feature: gene Location: 1867351-1867479 bp Feature: gene Location: 1868313-1871801 bp Ori: ASO05062.1 Gene: mexB Feature: domain Description: AcrB Location: 1868355-1871739 bp Feature: domain Description: AcrB Location: 1 868355-1 871 739 bp Feature: gene Location: 1936951-1937136 bp Feature: gene Location: 1937602-1938810 bp Ori: ASO05116.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1937626-1937854 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 937626-1 937854 bp Feature: domain Description: Phage_int_SAM_5 Location: 1937917-1938211 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 93791 7-1 93821 1 bp Feature: domain Description: INTN1_C_like Location: 1938259-1938775 bp Feature: domain Description: INTN1 _C_like Location: 1 938259-1 938775 bp Feature: gene Location: 1939516-1940922 bp Ori: ASO05117.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939855-1940473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939855-1 940473 bp Feature: domain Description: GIIM Note: maturase Location: 1940524-1940743 bp Feature: domain Description: GIIM Note: maturase Location: 1 940524-1 940743 bp Feature: gene Location: 1941198-1942145 bp Ori: ASO05118.1 Gene: narL Feature: domain Description: HTH_LUXR Location: 1941978-1942134 bp Feature: domain Description: HTH_LUXR Location: 1 941 978-1 9421 34 bp Feature: gene Location: 1942289-1942999 bp Ori: ASO05119.1 Feature: domain Description: DUF975 Location: 1942382-1942697 bp Feature: domain Description: DUF975 Location: 1 942382-1 942697 bp Feature: gene Location: 2098743-2099564 bp Ori: ASO05241.1 Feature: domain Description: Abi_C Location: 2099301-2099523 bp Feature: domain Description: Abi_C Location: 2099301 -2099523 bp Feature: gene Location: 2099551-2099796 bp Feature: gene Location: 2100512-2101762 bp Ori: ASO05243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100725-2101382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 00725-21 01 382 bp Feature: domain Description: GIIM Note: maturase Location: 2101478-2101685 bp Feature: domain Description: GIIM Note: maturase Location: 21 01 478-21 01 685 bp Feature: gene Location: 2101883-2102281 bp Feature: gene Location: 2102415-2102900 bp Feature: gene Location: 2286853-2287071 bp Feature: gene Location: 2287294-2287896 bp Feature: gene Location: 2288554-2289870 bp Ori: ASO05420.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2288749-2289364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2288749-2289364 bp Feature: domain Description: GIIM Note: maturase Location: 2289436-2289649 bp Feature: domain Description: GIIM Note: maturase Location: 2289436-2289649 bp Feature: gene Location: 2289935-2290297 bp Feature: gene Location: 2290301-2290759 bp Feature: gene Location: 2298979-2299413 bp Feature: gene Location: 2299609-2300277 bp Feature: gene Location: 2300921-2302237 bp Ori: ASO05436.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2301116-2301731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2301 1 1 6-2301 731 bp Feature: domain Description: GIIM Note: maturase Location: 2301803-2302016 bp Feature: domain Description: GIIM Note: maturase Location: 2301 803-230201 6 bp Feature: gene Location: 2302289-2303161 bp Feature: gene Location: 2303293-2303664 bp Feature: gene Location: 2309674-2310594 bp Ori: ASO05445.1 Feature: domain Description: SppA Location: 2309839-2310124 bp Feature: domain Description: SppA Location: 2309839-231 01 24 bp Feature: gene Location: 2310584-2310805 bp Feature: gene Location: 2311497-2312813 bp Ori: ASO05447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2311692-2312307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 692-231 2307 bp Feature: domain Description: GIIM Note: maturase Location: 2312379-2312592 bp Feature: domain Description: GIIM Note: maturase Location: 231 2379-231 2592 bp Feature: gene Location: 2312855-2313670 bp Feature: gene Location: 2313895-2314845 bp Ori: ASO05449.1 Feature: domain Description: nitrilase_7 Location: 2313904-2314771 bp Feature: domain Description: nitrilase_7 Location: 231 3904-231 4771 bp Feature: gene Location: 2626907-2627266 bp Ori: ASO05693.1 Feature: domain Description: zf-ISL3 Location: 2627060-2627150 bp Feature: domain Description: zf-ISL3 Location: 2627060-26271 50 bp Feature: gene Location: 2627616-2627885 bp Feature: gene Location: 2628596-2629912 bp Ori: ASO05695.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628791-2629406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628791 -2629406 bp Feature: domain Description: GIIM Note: maturase Location: 2629478-2629691 bp Feature: domain Description: GIIM Note: maturase Location: 2629478-2629691 bp Feature: gene Location: 2629974-2630717 bp Ori: ASO05696.1 Feature: domain Description: TauE Location: 2630007-2630682 bp Feature: domain Description: TauE Location: 2630007-2630682 bp Feature: gene Location: 2630730-2631443 bp Ori: ASO05697.1 Feature: domain Description: Nodulin-21_like_1 Location: 2630781-2631429 bp Feature: domain Description: Nodulin-21 _like_1 Location: 2630781 -2631 429 bp Feature: gene Location: 2631483-2632862 bp Ori: ASO05698.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 2631537-2631957 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2631 537-2631 957 bp Feature: domain Description: COG3547 Location: 2632371-2632698 bp Feature: domain Description: COG3547 Location: 2632371 -2632698 bp Feature: gene Location: 2633766-2635082 bp Ori: ASO05699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633961-2634576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633961 -2634576 bp Feature: domain Description: GIIM Note: maturase Location: 2634648-2634861 bp Feature: domain Description: GIIM Note: maturase Location: 2634648-2634861 bp Feature: gene Location: 2635137-2636024 bp Ori: ASO05700.1 Feature: domain Description: 45_DOPA_Dioxygenase Location: 2635257-2636019 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 2635257-263601 9 bp Feature: gene Location: 2636026-2636895 bp Ori: ASO05701.1 Feature: domain Description: TMR_SDR_a Location: 2636032-2636863 bp Feature: domain Description: TMR_SDR_a Location: 2636032-2636863 bp Feature: gene Location: 4315110-4316042 bp Ori: ASO07100.1 Feature: domain Description: SnoaL Location: 4315665-4316022 bp Feature: domain Description: SnoaL Location: 431 5665-431 6022 bp Feature: gene Location: 4316198-4317268 bp Ori: ASO07101.1 Feature: domain Description: SGL Location: 4316348-4316624 bp Feature: domain Description: SGL Location: 431 6348-431 6624 bp Feature: domain Description: SGL Location: 4316639-4317047 bp Feature: domain Description: SGL Location: 431 6639-431 7047 bp Feature: gene Location: 4318767-4320017 bp Ori: ASO07102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318980-4319637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 8980-431 9637 bp Feature: domain Description: GIIM Note: maturase Location: 4319733-4319940 bp Feature: domain Description: GIIM Note: maturase Location: 431 9733-431 9940 bp Feature: gene Location: 4320734-4321300 bp Feature: gene Location: 4321316-4321543 bp Ori: ASO07104.1 Feature: domain Description: CHASE Location: 4321370-4321532 bp Feature: domain Description: CHASE Location: 4321 370-4321 532 bp Feature: gene Location: 4330493-4330807 bp Ori: ASO07114.1 Feature: domain Description: InsE Location: 4330496-4330793 bp Feature: domain Description: InsE Location: 4330496-4330793 bp Feature: gene Location: 4330843-4331439 bp Ori: ASO07115.1 Feature: domain Description: YdiL Location: 4330873-4331431 bp Feature: domain Description: YdiL Location: 4330873-4331 431 bp Feature: gene Location: 4331624-4332874 bp Ori: ASO07116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4331837-4332494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4331 837-4332494 bp Feature: domain Description: GIIM Note: maturase Location: 4332590-4332797 bp Feature: domain Description: GIIM Note: maturase Location: 4332590-4332797 bp Feature: gene Location: 4333523-4333948 bp Feature: gene Location: 4334459-4335454 bp Ori: ASO07118.1 Feature: domain Description: COG3547 Location: 4334480-4335374 bp Feature: domain Description: COG3547 Location: 4334480-4335374 bp Feature: gene Location: 4341523-4342287 bp Ori: ASO07126.1 Gene: fabG Feature: domain Description: THN_reductase-like_SDR_c Location: 4341535-4342279 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 4341 535-4342279 bp Feature: gene Location: 4342298-4343164 bp Ori: ASO07127.1 Feature: domain Description: TMR_SDR_a Location: 4342310-4343132 bp Feature: domain Description: TMR_SDR_a Location: 434231 0-43431 32 bp Feature: gene Location: 4343935-4345251 bp Ori: ASO07128.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4344130-4344745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43441 30-4344745 bp Feature: domain Description: GIIM Note: maturase Location: 4344817-4345030 bp Feature: domain Description: GIIM Note: maturase Location: 434481 7-4345030 bp Feature: gene Location: 4345312-4345974 bp Feature: gene Location: 4345971-4346447 bp Ori: ASO07130.1 Feature: domain Description: DUF488 Location: 4346016-4346412 bp Feature: domain Description: DUF488 Location: 434601 6-434641 2 bp Feature: gene Location: 5210419-5212113 bp Ori: ASO07831.1 Feature: domain Description: DUF2207 Location: 5210491-5211913 bp Feature: domain Description: DUF2207 Location: 521 0491 -521 1 91 3 bp Feature: gene Location: 5212113-5212673 bp Ori: ASO07832.1 Feature: domain Description: LemA Location: 5212119-5212662 bp Feature: domain Description: LemA Location: 521 21 1 9-521 2662 bp Feature: gene Location: 5212932-5214338 bp Ori: ASO07833.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5213271-5213889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 3271 -521 3889 bp Feature: domain Description: GIIM Note: maturase Location: 5213940-5214159 bp Feature: domain Description: GIIM Note: maturase Location: 521 3940-521 41 59 bp Feature: gene Location: 5214802-5215731 bp Ori: ASO07834.1 Feature: domain Description: SnoaL_2 Location: 5214910-5215249 bp Feature: domain Description: SnoaL_2 Location: 521 491 0-521 5249 bp Feature: domain Description: SnoaL_2 Location: 5215357-5215690 bp Feature: domain Description: SnoaL_2 Location: 521 5357-521 5690 bp Feature: gene Location: 5216029-5216745 bp Ori: ASO07835.1 Gene: yhhW Feature: domain Description: YhaK Location: 5216050-5216731 bp Feature: domain Description: YhaK Location: 521 6050-521 6731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), YwqK (COG2849), RVT-GII, GIIM (pfam08388), AcrB (COG0841), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_LUXR (smart00421), DUF975 (pfam06161)
Abi_C (pfam14355), SppA (COG0616), nitrilase_7 (cd07585), zf-ISL3 (pfam14690), TauE (pfam01925), Nodulin-21_like_1 (cd02432), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), 45_DOPA_Dioxygenase (cd07363), TMR_SDR_a (cd05269)
SnoaL (pfam07366), SGL (pfam08450), CHASE (smart01079), InsE (COG2963), YdiL (COG1266), THN_reductase-like_SDR_c (cd05362), DUF488 (pfam04343), DUF2207 (pfam09972), LemA (pfam04011), SnoaL_2 (pfam12680)
YhaK (COG1741)