myRT

myRT report for GCA_002234575.2_ASM223457v2

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Seq: CP022464.2 [Clostridium] bolteae strain ATCC BAA-613 chromosome, complete genome (6570176 bp)
Overview 1 RT 1: 193870-196302 bp 2 RT 2: 1634864-1639981 bp 3 RT 3: 1725905-1732056 bp 4 RT 4: 3128509-3132442 bp 5 RT 5: 3375759-3379889 bp 6 RT 6: 4428623-4432532 bp 7 RT 7: 4691555-4701946 bp 8 RT 8: 6363432-6369305 bp 9 RT 9: 6437176-6447420 bp 10 RT 10: 6491395-6496888 bp Neighborhood of RT #1 [193870, 196379] MdlB ZupT RVT-GII HipB Neighborhood of RT #2 [1634864, 1640139] AraH MglA RVT-GII RVT-GII GIIM DDE_5 DDE_Tnp_1 Neighborhood of RT #3 [1725905, 1732070] PRK08270 NrdH RVT-GII GIIM HpcH PBP2_TRAP_Siap Neighborhood of RT #4 [3128509, 3132897] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Neighborhood of RT #5 [3375759, 3379889] PerM DUF3837 RVT-GII GIIM Neighborhood of RT #6 [4428623, 4432537] spoVFB NAT_SF YoaP RVT-Retrons UgpE Neighborhood of RT #7 [4691555, 4701975] Maff2 RVT-GII Intron_maturas2 HNHc PrgI RVT-GII HNHc TraC-F-type N6_N4_Mtase Neighborhood of RT #8 [6363432, 6369364] RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like HTH_17 HTH_17 Neighborhood of RT #9 [6437176, 6447428] DUF3851 TraC-F-type RVT-GII HNHc PrgI IME4 RVT-GII Intron_maturas2 HNHc Maff2 Neighborhood of RT #10 [6491395, 6496888] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc Feature: gene Location: 193870-194076 bp Ori: ASN98667.1 Feature: domain Description: MdlB Location: 193876-194047 bp Feature: domain Description: MdlB Location: 1 93876-1 94047 bp Feature: gene Location: 194190-194957 bp Ori: ASN93340.1 Feature: domain Description: ZupT Location: 194208-194955 bp Feature: domain Description: ZupT Location: 1 94208-1 94955 bp Feature: gene Location: 195247-195772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195256-195595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 95256-1 95595 bp Feature: gene Location: 195769-195924 bp Feature: gene Location: 196029-196379 bp Ori: ASN93341.1 Feature: domain Description: HipB Location: 196065-196302 bp Feature: domain Description: HipB Location: 1 96065-1 96302 bp Feature: gene Location: 1634864-1635820 bp Ori: ASN94588.1 Feature: domain Description: AraH Location: 1634882-1635791 bp Feature: domain Description: AraH Location: 1 634882-1 635791 bp Feature: gene Location: 1635798-1636559 bp Ori: ASN98750.1 Feature: domain Description: MglA Location: 1635810-1636539 bp Feature: domain Description: MglA Location: 1 63581 0-1 636539 bp Feature: gene Location: 1637327-1637824 bp Ori: ASN94589.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1637693-1637768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 637693-1 637768 bp Feature: gene Location: 1637821-1638369 bp Ori: ASN98751.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1637848-1638001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 637848-1 638001 bp Feature: domain Description: GIIM Note: maturase Location: 1638061-1638286 bp Feature: domain Description: GIIM Note: maturase Location: 1 638061 -1 638286 bp Feature: gene Location: 1638851-1639483 bp Ori: ASN94590.1 Feature: domain Description: DDE_5 Location: 1639007-1639373 bp Feature: domain Description: DDE_5 Location: 1 639007-1 639373 bp Feature: gene Location: 1639471-1640139 bp Ori: ASN94591.1 Feature: domain Description: DDE_Tnp_1 Location: 1639513-1639981 bp Feature: domain Description: DDE_Tnp_1 Location: 1 63951 3-1 639981 bp Feature: gene Location: 1725905-1728325 bp Ori: ASN94672.1 Feature: domain Description: PRK08270 Location: 1725911-1727891 bp Feature: domain Description: PRK08270 Location: 1 72591 1 -1 727891 bp Feature: domain Description: NrdH Location: 1728095-1728272 bp Feature: domain Description: NrdH Location: 1 728095-1 728272 bp Feature: gene Location: 1728336-1728632 bp Feature: gene Location: 1728834-1729958 bp Ori: ASN94674.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728882-1729509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 728882-1 729509 bp Feature: domain Description: GIIM Note: maturase Location: 1729563-1729791 bp Feature: domain Description: GIIM Note: maturase Location: 1 729563-1 729791 bp Feature: gene Location: 1730188-1730961 bp Ori: ASN94675.1 Feature: domain Description: HpcH Location: 1730194-1730944 bp Feature: domain Description: HpcH Location: 1 7301 94-1 730944 bp Feature: gene Location: 1730976-1732070 bp Ori: ASN94676.1 Feature: domain Description: PBP2_TRAP_Siap Location: 1731156-1732056 bp Feature: domain Description: PBP2_TRAP_Siap Location: 1 731 1 56-1 732056 bp Feature: gene Location: 3128509-3129603 bp Ori: ASN95742.1 Feature: domain Description: PHA00653 Location: 3128602-3129601 bp Feature: domain Description: PHA00653 Location: 31 28602-31 29601 bp Feature: gene Location: 3129663-3130052 bp Ori: ASN95743.1 Feature: domain Description: Avd_like Location: 3129723-3130026 bp Feature: domain Description: Avd_like Location: 31 29723-31 30026 bp Feature: gene Location: 3130410-3131450 bp Ori: ASN95744.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3130617-3131292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 3061 7-31 31 292 bp Feature: gene Location: 3131521-3131949 bp Ori: ASN95745.1 Feature: domain Description: Phage_holin_4_1 Location: 3131575-3131902 bp Feature: domain Description: Phage_holin_4_1 Location: 31 31 575-31 31 902 bp Feature: gene Location: 3131953-3132897 bp Ori: ASN95746.1 Feature: domain Description: FlgJ Location: 3131971-3132442 bp Feature: domain Description: FlgJ Location: 31 31 971 -31 32442 bp Feature: gene Location: 3375759-3377006 bp Ori: ASN95970.1 Feature: domain Description: PerM Location: 3375876-3376908 bp Feature: domain Description: PerM Location: 3375876-3376908 bp Feature: gene Location: 3377210-3377518 bp Ori: ASN95971.1 Feature: domain Description: DUF3837 Location: 3377216-3377513 bp Feature: domain Description: DUF3837 Location: 337721 6-337751 3 bp Feature: gene Location: 3377656-3379047 bp Ori: ASN95972.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3377971-3378598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3377971 -3378598 bp Feature: domain Description: GIIM Note: maturase Location: 3378652-3378880 bp Feature: domain Description: GIIM Note: maturase Location: 3378652-3378880 bp Feature: gene Location: 3379147-3379329 bp Feature: gene Location: 3379563-3379889 bp Feature: gene Location: 4428623-4429207 bp Ori: ASN96813.1 Feature: domain Description: spoVFB Location: 4428626-4429196 bp Feature: domain Description: spoVFB Location: 4428626-44291 96 bp Feature: gene Location: 4429510-4430253 bp Ori: ASN96814.1 Feature: domain Description: NAT_SF Location: 4429717-4429834 bp Feature: domain Description: NAT_SF Location: 442971 7-4429834 bp Feature: domain Description: YoaP Location: 4430116-4430242 bp Feature: domain Description: YoaP Location: 44301 1 6-4430242 bp Feature: gene Location: 4430265-4431272 bp Ori: ASN96815.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4430430-4430985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4430430-4430985 bp Feature: gene Location: 4431493-4431696 bp Feature: gene Location: 4431704-4432537 bp Ori: ASN96817.1 Feature: domain Description: UgpE Location: 4431719-4432532 bp Feature: domain Description: UgpE Location: 4431 71 9-4432532 bp Feature: gene Location: 4691555-4691770 bp Ori: ASN97040.1 Feature: domain Description: Maff2 Location: 4691558-4691765 bp Feature: domain Description: Maff2 Location: 4691 558-4691 765 bp Feature: gene Location: 4691790-4692461 bp Feature: gene Location: 4693037-4694869 bp Ori: ASN97042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693301-4694132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693301 -46941 32 bp Feature: domain Description: Intron_maturas2 Location: 4694204-4694519 bp Feature: domain Description: Intron_maturas2 Location: 4694204-469451 9 bp Feature: domain Description: HNHc Note: nucleases Location: 4694666-4694840 bp Feature: domain Description: HNHc Note: nucleases Location: 4694666-4694840 bp Feature: gene Location: 4694945-4695247 bp Feature: gene Location: 4695425-4695826 bp Ori: ASN97044.1 Feature: domain Description: PrgI Location: 4695440-4695713 bp Feature: domain Description: PrgI Location: 4695440-469571 3 bp Feature: gene Location: 4695777-4696763 bp Feature: gene Location: 4697504-4699477 bp Ori: ASN97045.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697840-4698578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697840-4698578 bp Feature: domain Description: HNHc Note: nucleases Location: 4699133-4699271 bp Feature: domain Description: HNHc Note: nucleases Location: 46991 33-4699271 bp Feature: gene Location: 4699565-4701019 bp Feature: domain Description: TraC-F-type Location: 4699598-4700882 bp Feature: domain Description: TraC-F-type Location: 4699598-4700882 bp Feature: gene Location: 4701016-4701975 bp Ori: ASN97046.1 Feature: domain Description: N6_N4_Mtase Location: 4701094-4701946 bp Feature: domain Description: N6_N4_Mtase Location: 4701 094-4701 946 bp Feature: gene Location: 6363432-6363797 bp Feature: gene Location: 6363742-6364830 bp Feature: gene Location: 6365060-6366340 bp Ori: ASN99003.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6365270-6365885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6365270-6365885 bp Feature: domain Description: GIIM Note: maturase Location: 6365948-6366167 bp Feature: domain Description: GIIM Note: maturase Location: 6365948-63661 67 bp Feature: gene Location: 6367567-6368949 bp Ori: ASN98466.1 Feature: domain Description: Phage_int_SAM_3 Location: 6367747-6367918 bp Feature: domain Description: Phage_int_SAM_3 Location: 6367747-636791 8 bp Feature: domain Description: INT_ICEBs1_C_like Location: 6368119-6368749 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 63681 1 9-6368749 bp Feature: gene Location: 6368927-6369364 bp Ori: ASN98467.1 Feature: domain Description: HTH_17 Location: 6368957-6369098 bp Feature: domain Description: HTH_1 7 Location: 6368957-6369098 bp Feature: domain Description: HTH_17 Location: 6369161-6369305 bp Feature: domain Description: HTH_1 7 Location: 63691 61 -6369305 bp Feature: gene Location: 6437176-6437550 bp Ori: ASN98535.1 Feature: domain Description: DUF3851 Location: 6437179-6437548 bp Feature: domain Description: DUF3851 Location: 64371 79-6437548 bp Feature: gene Location: 6437553-6438992 bp Feature: domain Description: TraC-F-type Location: 6437580-6438792 bp Feature: domain Description: TraC-F-type Location: 6437580-6438792 bp Feature: gene Location: 6439086-6441059 bp Ori: ASN98536.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6439422-6440160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6439422-64401 60 bp Feature: domain Description: HNHc Note: nucleases Location: 6440715-6440853 bp Feature: domain Description: HNHc Note: nucleases Location: 644071 5-6440853 bp Feature: gene Location: 6441782-6442783 bp Feature: gene Location: 6442713-6443168 bp Ori: ASN98538.1 Feature: domain Description: PrgI Location: 6442728-6443001 bp Feature: domain Description: PrgI Location: 6442728-6443001 bp Feature: gene Location: 6443183-6443728 bp Ori: ASN98539.1 Feature: domain Description: IME4 Location: 6443192-6443711 bp Feature: domain Description: IME4 Location: 64431 92-644371 1 bp Feature: gene Location: 6443743-6443991 bp Feature: gene Location: 6444121-6445953 bp Ori: ASN98541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444385-6445216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444385-644521 6 bp Feature: domain Description: Intron_maturas2 Location: 6445288-6445603 bp Feature: domain Description: Intron_maturas2 Location: 6445288-6445603 bp Feature: domain Description: HNHc Note: nucleases Location: 6445750-6445924 bp Feature: domain Description: HNHc Note: nucleases Location: 6445750-6445924 bp Feature: gene Location: 6446529-6447200 bp Feature: gene Location: 6447270-6447428 bp Feature: domain Description: Maff2 Location: 6447330-6447420 bp Feature: domain Description: Maff2 Location: 6447330-6447420 bp Feature: gene Location: 6491395-6493275 bp Ori: ASN98596.1 Feature: domain Description: SR_TndX_transposase Location: 6491419-6491827 bp Feature: domain Description: SR_TndX_transposase Location: 6491 41 9-6491 827 bp Feature: domain Description: Recombinase Location: 6491926-6492289 bp Feature: domain Description: Recombinase Location: 6491 926-6492289 bp Feature: domain Description: Zn_ribbon_recom Location: 6492331-6492514 bp Feature: domain Description: Zn_ribbon_recom Location: 6492331 -649251 4 bp Feature: domain Description: DUF4368 Location: 6492799-6492985 bp Feature: domain Description: DUF4368 Location: 6492799-6492985 bp Feature: gene Location: 6493366-6493896 bp Feature: domain Description: T4SS-DNA_transf Location: 6493519-6493822 bp Feature: domain Description: T4SS-DNA_transf Location: 649351 9-6493822 bp Feature: gene Location: 6494005-6495822 bp Ori: ASN98597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6494269-6495088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6494269-6495088 bp Feature: domain Description: Intron_maturas2 Location: 6495160-6495463 bp Feature: domain Description: Intron_maturas2 Location: 64951 60-6495463 bp Feature: domain Description: HNHc Note: nucleases Location: 6495643-6495787 bp Feature: domain Description: HNHc Note: nucleases Location: 6495643-6495787 bp Feature: gene Location: 6495788-6495983 bp Feature: gene Location: 6496382-6496888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), ZupT (COG0428), RVT-GII, HipB (COG1396), AraH (COG1172), MglA (COG1129), GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_1 (pfam01609), PRK08270 (ribonucleoside triphosphate reductase)
NrdH (cd02976), HpcH (COG3836), PBP2_TRAP_Siap (cd13672), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PerM (COG0628), DUF3837 (pfam12939)
spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395), Maff2 (pfam12750), Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), TraC-F-type (TIGR02746)
N6_N4_Mtase (pfam01555), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), HTH_17 (pfam12728), DUF3851 (pfam12962), IME4 (COG4725), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)
T4SS-DNA_transf (pfam02534)