myRT

myRT report for GCA_002240075.1_ASM224007v1

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Seq: CP020337.1 Shigella flexneri 4c strain 1602 plasmid unnamed1, complete sequence (223354 bp)
Overview 1 RT 1: 107978-110030 bp 2 RT 2: 119921-122634 bp 3 RT 3: 216901-219516 bp Neighborhood of RT #1 [107978, 110227] RVT-GII PHA02517 PHA02517 Neighborhood of RT #2 [119921, 122654] DDE_Tnp_IS66_C GIIM RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #3 [216901, 219542] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 107978-108343 bp Feature: gene Location: 108791-108969 bp Feature: gene Location: 109063-109302 bp Ori: ASQ55997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109069-109276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09069-1 09276 bp Feature: gene Location: 109449-109658 bp Ori: ASQ56096.1 Feature: domain Description: PHA02517 Location: 109542-109614 bp Feature: domain Description: PHA0251 7 Location: 1 09542-1 0961 4 bp Feature: gene Location: 109664-110227 bp Ori: ASQ55998.1 Feature: domain Description: PHA02517 Location: 109724-110030 bp Feature: domain Description: PHA0251 7 Location: 1 09724-1 1 0030 bp Feature: gene Location: 119921-120010 bp Ori: ASQ56002.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 119933-120008 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 9933-1 20008 bp Feature: gene Location: 120114-120518 bp Ori: ASQ56097.1 Feature: domain Description: GIIM Note: maturase Location: 120225-120444 bp Feature: domain Description: GIIM Note: maturase Location: 1 20225-1 20444 bp Feature: gene Location: 120493-121296 bp Ori: ASQ56003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120793-121288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20793-1 21 288 bp Feature: gene Location: 121309-121509 bp Ori: ASQ56004.1 Feature: domain Description: Tra5 Location: 121318-121492 bp Feature: domain Description: Tra5 Location: 1 21 31 8-1 21 492 bp Feature: gene Location: 121905-122654 bp Ori: ASQ56005.1 Feature: domain Description: PAP2_acid_phosphatase Location: 121980-122634 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 21 980-1 22634 bp Feature: gene Location: 216901-217383 bp Feature: domain Description: COG3547 Location: 216919-217372 bp Feature: domain Description: COG3547 Location: 21 691 9-21 7372 bp Feature: gene Location: 217413-217604 bp Ori: ASQ56084.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 217470-217581 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 7470-21 7581 bp Feature: gene Location: 217675-218853 bp Ori: ASQ56085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217822-218476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7822-21 8476 bp Feature: domain Description: GIIM Note: maturase Location: 218554-218776 bp Feature: domain Description: GIIM Note: maturase Location: 21 8554-21 8776 bp Feature: gene Location: 218927-219381 bp Feature: gene Location: 219369-219542 bp Ori: ASQ56086.1 Feature: domain Description: DDE_Tnp_IS66 Location: 219372-219516 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 9372-21 951 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)

Seq: CP020336.1 Shigella flexneri 4c strain 1602 chromosome, complete genome (4661857 bp)
Overview 1 RT 1: 1193027-1196159 bp 2 RT 2: 1557591-1560942 bp 3 RT 3: 2034234-2037497 bp 4 RT 4: 3095869-3098988 bp 5 RT 5: 3214357-3221391 bp Neighborhood of RT #1 [1193027, 1196159] Inovirus_Gp2 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1557591, 1560968] RVT-GII GIIM PHA02517 Phage_pRha Neighborhood of RT #3 [2034234, 2037497] DUF2534 PHA02517 RVT-GII GIIM Neighborhood of RT #4 [3095869, 3098988] PHA02517 RVT-GII GIIM Neighborhood of RT #5 [3214357, 3221391] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 1193027-1193443 bp Feature: domain Description: Inovirus_Gp2 Location: 1193099-1193363 bp Feature: domain Description: Inovirus_Gp2 Location: 1193099-1193363 bp Feature: gene Location: 1193408-1193887 bp Feature: domain Description: PHA02517 Location: 1193411-1193885 bp Feature: domain Description: PHA02 517 Location: 1193411-1193885 bp Feature: gene Location: 1193971-1195494 bp Ori: ASQ52701.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194244-1194976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11942 44-1194976 bp Feature: domain Description: GIIM Note: maturase Location: 1195051-1195249 bp Feature: domain Description: GIIM Note: maturase Location: 1195051-11952 49 bp Feature: gene Location: 1195448-1195873 bp Feature: gene Location: 1195788-1196159 bp Feature: gene Location: 1557591-1558022 bp Feature: gene Location: 1557937-1558362 bp Feature: gene Location: 1558316-1559839 bp Ori: ASQ53041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558589-1559321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558589-155932 1 bp Feature: domain Description: GIIM Note: maturase Location: 1559396-1559594 bp Feature: domain Description: GIIM Note: maturase Location: 1559396-1559594 bp Feature: gene Location: 1559920-1560408 bp Feature: domain Description: PHA02517 Location: 1559923-1560397 bp Feature: domain Description: PHA02 517 Location: 155992 3-1560397 bp Feature: gene Location: 1560786-1560968 bp Ori: ASQ53042.1 Feature: domain Description: Phage_pRha Location: 1560855-1560942 bp Feature: domain Description: Phage_pRha Location: 1560855-1560942 bp Feature: gene Location: 2034234-2034491 bp Feature: domain Description: DUF2534 Location: 2034249-2034480 bp Feature: domain Description: DUF2 534 Location: 2 0342 49-2 034480 bp Feature: gene Location: 2034691-2035168 bp Feature: domain Description: PHA02517 Location: 2034694-2034934 bp Feature: domain Description: PHA02 517 Location: 2 034694-2 034934 bp Feature: gene Location: 2035249-2036772 bp Ori: ASQ53457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2035522-2036254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 03552 2 -2 0362 54 bp Feature: domain Description: GIIM Note: maturase Location: 2036329-2036527 bp Feature: domain Description: GIIM Note: maturase Location: 2 03632 9-2 03652 7 bp Feature: gene Location: 2036726-2037151 bp Feature: gene Location: 2037066-2037497 bp Feature: gene Location: 3095869-3096177 bp Feature: gene Location: 3096171-3096659 bp Feature: domain Description: PHA02517 Location: 3096174-3096648 bp Feature: domain Description: PHA02 517 Location: 3096174-3096648 bp Feature: gene Location: 3096740-3098263 bp Ori: ASQ54355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3097013-3097745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3097013-3097745 bp Feature: domain Description: GIIM Note: maturase Location: 3097820-3098018 bp Feature: domain Description: GIIM Note: maturase Location: 309782 0-3098018 bp Feature: gene Location: 3098217-3098642 bp Feature: gene Location: 3098557-3098988 bp Feature: gene Location: 3214357-3218475 bp Ori: ASQ54455.1 Feature: domain Description: Peptidase_S6 Location: 3214510-3216682 bp Feature: domain Description: Peptidase_S6 Location: 32 14510-32 16682 bp Feature: domain Description: autotrans_barl Location: 3217246-3218473 bp Feature: domain Description: autotrans_barl Location: 32 172 46-32 18473 bp Feature: gene Location: 3218640-3219119 bp Feature: domain Description: PHA02517 Location: 3218643-3219117 bp Feature: domain Description: PHA02 517 Location: 32 18643-32 19117 bp Feature: gene Location: 3219203-3220726 bp Ori: ASQ54456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3219476-3220208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 19476-32 2 02 08 bp Feature: domain Description: GIIM Note: maturase Location: 3220283-3220481 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 02 83-32 2 0481 bp Feature: gene Location: 3220680-3221105 bp Feature: gene Location: 3221020-3221391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Phage_pRha (pfam09669), DUF2534 (pfam10749), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)