myRT

myRT report for GCA_002240115.1_ASM224011v1

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Seq: CP020343.1 Shigella flexneri 1a strain 0439 plasmid unnamed1, complete sequence (144194 bp)
Overview 1 RT 1: 29407-32022 bp 2 RT 2: 64627-66679 bp 3 RT 3: 76570-79283 bp Neighborhood of RT #1 [29407, 32048] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [64627, 66876] RVT-GII PHA02517 PHA02517 Neighborhood of RT #3 [76570, 79303] DDE_Tnp_IS66_C GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 29407-29889 bp Feature: domain Description: COG3547 Location: 29425-29878 bp Feature: domain Description: COG3547 Location: 29425-29878 bp Feature: gene Location: 29919-30110 bp Ori: ASQ64836.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 29976-30087 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29976-30087 bp Feature: gene Location: 30181-31359 bp Ori: ASQ64837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30328-30982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30328-30982 bp Feature: domain Description: GIIM Note: maturase Location: 31060-31282 bp Feature: domain Description: GIIM Note: maturase Location: 31 060-31 282 bp Feature: gene Location: 31433-31887 bp Feature: gene Location: 31875-32048 bp Ori: ASQ64838.1 Feature: domain Description: DDE_Tnp_IS66 Location: 31878-32022 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 878-32022 bp Feature: gene Location: 64627-64992 bp Feature: gene Location: 65440-65618 bp Feature: gene Location: 65712-65951 bp Ori: ASQ64862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65718-65925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6571 8-65925 bp Feature: gene Location: 66098-66307 bp Ori: ASQ64933.1 Feature: domain Description: PHA02517 Location: 66191-66263 bp Feature: domain Description: PHA0251 7 Location: 661 91 -66263 bp Feature: gene Location: 66313-66876 bp Ori: ASQ64863.1 Feature: domain Description: PHA02517 Location: 66373-66679 bp Feature: domain Description: PHA0251 7 Location: 66373-66679 bp Feature: gene Location: 76570-76659 bp Ori: ASQ64867.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 76582-76657 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 76582-76657 bp Feature: gene Location: 76763-77167 bp Ori: ASQ64934.1 Feature: domain Description: GIIM Note: maturase Location: 76874-77093 bp Feature: domain Description: GIIM Note: maturase Location: 76874-77093 bp Feature: gene Location: 77142-77945 bp Ori: ASQ64868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77442-77937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77442-77937 bp Feature: gene Location: 77958-78158 bp Ori: ASQ64869.1 Feature: domain Description: Tra5 Location: 77967-78141 bp Feature: domain Description: Tra5 Location: 77967-781 41 bp Feature: gene Location: 78554-79303 bp Ori: ASQ64870.1 Feature: domain Description: PAP2_acid_phosphatase Location: 78629-79283 bp Feature: domain Description: PAP2_acid_phosphatase Location: 78629-79283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: CP020342.1 Shigella flexneri 1a strain 0439 chromosome, complete genome (4681581 bp)
Overview 1 RT 1: 1886011-1893043 bp 2 RT 2: 3923418-3926470 bp Neighborhood of RT #1 [1886011, 1893045] RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Neighborhood of RT #2 [3923418, 3926550] RVT-GII GIIM PHA02517 Inovirus_Gp2 Feature: gene Location: 1886011-1886382 bp Feature: gene Location: 1886297-1886722 bp Feature: gene Location: 1886676-1888199 bp Ori: ASQ62197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886949-1887681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886949-1887681 bp Feature: domain Description: GIIM Note: maturase Location: 1887756-1887954 bp Feature: domain Description: GIIM Note: maturase Location: 1887756-1887954 bp Feature: gene Location: 1888283-1888762 bp Feature: domain Description: PHA02517 Location: 1888286-1888760 bp Feature: domain Description: PHA02 517 Location: 18882 86-1888760 bp Feature: gene Location: 1888927-1893045 bp Ori: ASQ62198.1 Feature: domain Description: Peptidase_S6 Location: 1889080-1891252 bp Feature: domain Description: Peptidase_S6 Location: 1889080-18912 52 bp Feature: domain Description: autotrans_barl Location: 1891816-1893043 bp Feature: domain Description: autotrans_barl Location: 1891816-1893043 bp Feature: gene Location: 3923418-3923789 bp Feature: gene Location: 3923704-3924129 bp Feature: gene Location: 3924083-3925606 bp Ori: ASQ63942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3924356-3925088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 4356-392 5088 bp Feature: domain Description: GIIM Note: maturase Location: 3925163-3925361 bp Feature: domain Description: GIIM Note: maturase Location: 392 5163-392 5361 bp Feature: gene Location: 3925690-3926169 bp Feature: domain Description: PHA02517 Location: 3925693-3926167 bp Feature: domain Description: PHA02 517 Location: 392 5693-392 6167 bp Feature: gene Location: 3926134-3926550 bp Feature: domain Description: Inovirus_Gp2 Location: 3926206-3926470 bp Feature: domain Description: Inovirus_Gp2 Location: 392 62 06-392 6470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), Inovirus_Gp2 (pfam11726)