myRT

myRT report for GCA_002243605.1_ASM224360v1

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Seq: CP017692.1 Geobacillus lituanicus strain N-3 chromosome, complete genome (3447958 bp)
Overview 1 RT 1: 1472811-1478902 bp 2 RT 2: 1575076-1580455 bp 3 RT 3: 2945155-2949115 bp 4 RT 4: 3369084-3376319 bp Neighborhood of RT #1 [1472811, 1478922] YugN pgi RVT-GII GIIM YqdH YuzA Neighborhood of RT #2 [1575076, 1580455] PRK09907 RVT-GII GIIM PnbA Neighborhood of RT #3 [2945155, 2949150] RVT-CRISPR COG4951 Cas_Cas1 Cas2_I_II_III Neighborhood of RT #4 [3369084, 3376321] PRK00549 recA RVT-GII HNHc recA RNase_Y Feature: gene Location: 1472811-1473215 bp Ori: ASS86945.1 Feature: domain Description: YugN Location: 1472820-1473207 bp Feature: domain Description: YugN Location: 1 472820-1 473207 bp Feature: gene Location: 1473461-1474810 bp Ori: ASS88689.1 Feature: domain Description: pgi Location: 1473464-1474805 bp Feature: domain Description: pgi Location: 1 473464-1 474805 bp Feature: gene Location: 1475261-1476523 bp Ori: ASS86946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1475462-1476080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 475462-1 476080 bp Feature: domain Description: GIIM Note: maturase Location: 1476128-1476344 bp Feature: domain Description: GIIM Note: maturase Location: 1 4761 28-1 476344 bp Feature: gene Location: 1477370-1478533 bp Ori: ASS86947.1 Feature: domain Description: YqdH Location: 1477373-1478528 bp Feature: domain Description: YqdH Location: 1 477373-1 478528 bp Feature: gene Location: 1478689-1478922 bp Ori: ASS88690.1 Feature: domain Description: YuzA Location: 1478704-1478902 bp Feature: domain Description: YuzA Location: 1 478704-1 478902 bp Feature: gene Location: 1575076-1575459 bp Ori: ASS88704.1 Feature: domain Description: PRK09907 Location: 1575091-1575415 bp Feature: domain Description: PRK09907 Location: 1 575091 -1 57541 5 bp Feature: gene Location: 1575717-1575947 bp Feature: gene Location: 1575999-1577258 bp Ori: ASS87041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576197-1576815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5761 97-1 57681 5 bp Feature: domain Description: GIIM Note: maturase Location: 1576863-1577076 bp Feature: domain Description: GIIM Note: maturase Location: 1 576863-1 577076 bp Feature: gene Location: 1577914-1578697 bp Feature: domain Description: PnbA Location: 1577926-1578508 bp Feature: domain Description: PnbA Location: 1 577926-1 578508 bp Feature: gene Location: 1579748-1580455 bp Feature: gene Location: 2945155-2947908 bp Ori: ASS88148.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2945368-2945938 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2945368-2945938 bp Feature: domain Description: COG4951 Location: 2946628-2947207 bp Feature: domain Description: COG4951 Location: 2946628-2947207 bp Feature: gene Location: 2947905-2948900 bp Ori: ASS88149.1 Feature: domain Description: Cas_Cas1 Location: 2947917-2948772 bp Feature: domain Description: Cas_Cas1 Location: 294791 7-2948772 bp Feature: gene Location: 2948848-2949150 bp Ori: ASS88150.1 Feature: domain Description: Cas2_I_II_III Location: 2948887-2949115 bp Feature: domain Description: Cas2_I_II_III Location: 2948887-29491 1 5 bp Feature: gene Location: 3369084-3370328 bp Ori: ASS88519.1 Feature: domain Description: PRK00549 Location: 3369090-3370317 bp Feature: domain Description: PRK00549 Location: 3369090-337031 7 bp Feature: gene Location: 3370506-3370811 bp Ori: ASS88520.1 Feature: domain Description: recA Location: 3370512-3370797 bp Feature: domain Description: recA Location: 337051 2-3370797 bp Feature: gene Location: 3371630-3373444 bp Ori: ASS88521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3371885-3372596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3371 885-3372596 bp Feature: domain Description: HNHc Note: nucleases Location: 3373193-3373358 bp Feature: domain Description: HNHc Note: nucleases Location: 33731 93-3373358 bp Feature: gene Location: 3373490-3374332 bp Ori: ASS88522.1 Feature: domain Description: recA Location: 3373580-3374276 bp Feature: domain Description: recA Location: 3373580-3374276 bp Feature: gene Location: 3374765-3376321 bp Ori: ASS88523.1 Feature: domain Description: RNase_Y Location: 3374783-3376319 bp Feature: domain Description: RNase_Y Location: 3374783-337631 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YugN (pfam08868), pgi (PRK14097), RVT-GII, GIIM (pfam08388), YqdH (COG1979), YuzA (COG2155), PRK09907 (endoribonuclease MazF), PnbA (COG2272), RVT-CRISPR, COG4951 (Uncharacterized protein )
Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), PRK00549 (competence damage-inducible protein A; Provisional), recA (PRK09519), HNHc (smart00507), RNase_Y (TIGR03319)