myRT

myRT report for GCA_002243685.1_ASM224368v1

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Seq: CP020756.1 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence (137311 bp)
Overview 1 RT 1: 1965-7814 bp 2 RT 2: 18652-27476 bp 3 RT 3: 117164-123355 bp 4 RT 4: 133990-138694 bp Neighborhood of RT #1 [1965, 9521] T4SS-DNA_transf RVT-GII MobA_MobL Neighborhood of RT #2 [18652, 27496] VirB4_CagE RVT-GII PRK09183 RVT-GII HNHc TraC-F-type Glucosaminidase Spr Neighborhood of RT #3 [117164, 124879] T4SS-DNA_transf RVT-GII HNHc VirD4 MobA_MobL Neighborhood of RT #4 [133990, 139196] RVT-GII PRK07726 PRK07726 PRK07726 Feature: gene Location: 1965-2392 bp Feature: gene Location: 2658-4317 bp Feature: domain Description: T4SS-DNA_transf Location: 2661-3336 bp Feature: domain Description: T4SS-DNA_transf Location: 2661 -3336 bp Feature: gene Location: 4433-6243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-5171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-51 71 bp Feature: gene Location: 6614-6814 bp Feature: gene Location: 7589-9521 bp Feature: domain Description: MobA_MobL Location: 7637-7814 bp Feature: domain Description: MobA_MobL Location: 7637-781 4 bp Feature: gene Location: 18652-19688 bp Feature: gene Location: 19704-20588 bp Ori: AST05255.1 Feature: domain Description: VirB4_CagE Location: 19887-20577 bp Feature: domain Description: VirB4_CagE Location: 1 9887-20577 bp Feature: gene Location: 21304-21792 bp Ori: AST05256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21604-21757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 604-21 757 bp Feature: gene Location: 21847-23141 bp Feature: gene Location: 23131-23883 bp Ori: AST05257.1 Feature: domain Description: PRK09183 Location: 23137-23863 bp Feature: domain Description: PRK091 83 Location: 231 37-23863 bp Feature: gene Location: 23972-25323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23984-24497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23984-24497 bp Feature: domain Description: HNHc Note: nucleases Location: 25058-25181 bp Feature: domain Description: HNHc Note: nucleases Location: 25058-251 81 bp Feature: gene Location: 25610-26443 bp Ori: AST05332.1 Feature: domain Description: TraC-F-type Location: 25739-26294 bp Feature: domain Description: TraC-F-type Location: 25739-26294 bp Feature: gene Location: 26459-27496 bp Ori: AST05258.1 Feature: domain Description: Glucosaminidase Location: 26711-26951 bp Feature: domain Description: Glucosaminidase Location: 2671 1 -26951 bp Feature: domain Description: Spr Location: 27131-27476 bp Feature: domain Description: Spr Location: 271 31 -27476 bp Feature: gene Location: 117164-117594 bp Feature: gene Location: 117861-119543 bp Ori: AST05324.1 Feature: domain Description: T4SS-DNA_transf Location: 117864-118950 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 7864-1 1 8950 bp Feature: gene Location: 119660-121492 bp Ori: AST05325.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119960-120665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9960-1 20665 bp Feature: domain Description: HNHc Note: nucleases Location: 121244-121376 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 244-1 21 376 bp Feature: gene Location: 122208-122801 bp Ori: AST05336.1 Feature: domain Description: VirD4 Location: 122373-122790 bp Feature: domain Description: VirD4 Location: 1 22373-1 22790 bp Feature: gene Location: 122812-124879 bp Feature: domain Description: MobA_MobL Location: 122923-123355 bp Feature: domain Description: MobA_MobL Location: 1 22923-1 23355 bp Feature: gene Location: 133990-135030 bp Feature: gene Location: 135027-135894 bp Feature: gene Location: 136648-137088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136915-137053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3691 5-1 37053 bp Feature: gene Location: 137275-139196 bp Feature: domain Description: PRK07726 Location: 137287-137488 bp Feature: domain Description: PRK07726 Location: 1 37287-1 37488 bp Feature: domain Description: PRK07726 Location: 137917-138220 bp Feature: domain Description: PRK07726 Location: 1 3791 7-1 38220 bp Feature: domain Description: PRK07726 Location: 138445-138694 bp Feature: domain Description: PRK07726 Location: 1 38445-1 38694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, MobA_MobL (pfam03389), VirB4_CagE (TIGR00929), PRK09183 (transposase/IS protein; Provisional), HNHc (smart00507), TraC-F-type (TIGR02746), Glucosaminidase (pfam01832), Spr (COG0791), VirD4 (COG3505)
PRK07726 (DNA topoisomerase 3)

Seq: CP020755.1 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence (600505 bp)
Overview 1 RT 1: 386801-392408 bp 2 RT 2: 403467-410732 bp 3 RT 3: 466794-481320 bp Neighborhood of RT #1 [386801, 392408] LolE LolE ABC_MJ0796_LolCDE_FtsE RVT-GII Neighborhood of RT #2 [403467, 410732] DUF5373 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [466794, 481320] TrbL RVT-GII CwlT_like RVT-GII HNHc CwlT_like RVT-GII NlpD Spr Feature: gene Location: 386801-389350 bp Feature: domain Description: LolE Location: 386822-387938 bp Feature: domain Description: LolE Location: 38682 2 -387938 bp Feature: domain Description: LolE Location: 388946-389345 bp Feature: domain Description: LolE Location: 388946-389345 bp Feature: gene Location: 389341-389817 bp Ori: AST05125.1 Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 389371-389743 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 389371-389743 bp Feature: gene Location: 389883-391677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390141-390834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390141-390834 bp Feature: gene Location: 391839-392069 bp Feature: gene Location: 392220-392408 bp Feature: gene Location: 403467-405340 bp Feature: gene Location: 406013-406533 bp Feature: domain Description: DUF5373 Location: 406223-406499 bp Feature: domain Description: DUF5373 Location: 4062 2 3-406499 bp Feature: gene Location: 406672-408495 bp Ori: AST05129.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406942-407770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406942 -407770 bp Feature: domain Description: Intron_maturas2 Location: 407842-408160 bp Feature: domain Description: Intron_maturas2 Location: 407842 -408160 bp Feature: domain Description: HNHc Note: nucleases Location: 408313-408466 bp Feature: domain Description: HNHc Note: nucleases Location: 408313-408466 bp Feature: gene Location: 409096-410241 bp Feature: gene Location: 410259-410732 bp Feature: gene Location: 466794-470719 bp Feature: domain Description: TrbL Location: 467085-467571 bp Feature: domain Description: TrbL Location: 467085-467571 bp Feature: gene Location: 470716-471712 bp Feature: gene Location: 472386-474189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472680-473016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 680-473016 bp Feature: gene Location: 474305-474472 bp Ori: AST05163.1 Feature: domain Description: CwlT_like Location: 474347-474455 bp Feature: domain Description: CwlT_like Location: 474347-474455 bp Feature: gene Location: 474513-474701 bp Feature: gene Location: 474852-475082 bp Feature: gene Location: 475245-477041 bp Ori: AST05165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475503-476208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475503-4762 08 bp Feature: domain Description: HNHc Note: nucleases Location: 476769-476904 bp Feature: domain Description: HNHc Note: nucleases Location: 476769-476904 bp Feature: gene Location: 477110-477301 bp Ori: AST05166.1 Feature: domain Description: CwlT_like Location: 477137-477290 bp Feature: domain Description: CwlT_like Location: 477137-4772 90 bp Feature: gene Location: 477877-479699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478141-478588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478141-478588 bp Feature: gene Location: 479832-480728 bp Ori: AST05167.1 Feature: domain Description: NlpD Location: 479874-480300 bp Feature: domain Description: NlpD Location: 479874-480300 bp Feature: domain Description: Spr Location: 480333-480669 bp Feature: domain Description: Spr Location: 480333-480669 bp Feature: gene Location: 480745-481320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolE (COG4591), ABC_MJ0796_LolCDE_FtsE (cd03255), RVT-GII, DUF5373 (pfam17343), Intron_maturas2 (pfam01348), HNHc (smart00507), TrbL (pfam04610), CwlT_like, NlpD (COG0739), Spr (COG0791)

Seq: CP020754.1 Bacillus thuringiensis strain ATCC 10792 chromosome, complete genome (5528419 bp)
Overview 1 RT 1: 2643024-2650302 bp 2 RT 2: 3051649-3057088 bp 3 RT 3: 3971158-3975646 bp 4 RT 4: 5207816-5213482 bp 5 RT 5: 5508873-5515681 bp Neighborhood of RT #1 [2643024, 2650316] Ntn_PVA ETR_like RVT-GII HTH_28 HTH_28 HTH_28 Tra5 Neighborhood of RT #2 [3051649, 3057399] TDH_SDR_e gly_Cac_T_rel RVT-GII HNHc gly_Cac_T_rel Methyltransf_25 Neighborhood of RT #3 [3971158, 3975646] DUF4870 PRK10420 RVT-GII DEDD_Tnp_IS110 Neighborhood of RT #4 [5207816, 5214047] caa3_CtaG RVT-GII HNHc amiF HTH_28 HTH_23 HTH_21 Neighborhood of RT #5 [5508873, 5515710] YnbB HTH_GlnR-like RVT-GII GlnA PadR Feature: gene Location: 2643024-2644009 bp Feature: domain Description: Ntn_PVA Location: 2643030-2643822 bp Feature: domain Description: Ntn_PVA Location: 2643 03 0-2643 822 bp Feature: gene Location: 2644155-2645141 bp Ori: AST04840.1 Feature: domain Description: ETR_like Location: 2644179-2645115 bp Feature: domain Description: ETR_like Location: 2644179-2645115 bp Feature: gene Location: 2645815-2647619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646109-2646805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646109-2646805 bp Feature: gene Location: 2647847-2648151 bp Feature: gene Location: 2648757-2650316 bp Feature: domain Description: HTH_28 Location: 2648787-2648922 bp Feature: domain Description: HTH_28 Location: 2648787-2648922 bp Feature: domain Description: HTH_28 Location: 2648961-2649084 bp Feature: domain Description: HTH_28 Location: 2648961-2649084 bp Feature: domain Description: HTH_28 Location: 2649150-2649306 bp Feature: domain Description: HTH_28 Location: 2649150-26493 06 bp Feature: domain Description: Tra5 Location: 2649918-2650302 bp Feature: domain Description: Tra5 Location: 2649918-26503 02 bp Feature: gene Location: 3051649-3052629 bp Ori: AST04862.1 Feature: domain Description: TDH_SDR_e Location: 3051673-3052591 bp Feature: domain Description: TDH_SDR_e Location: 3 051673 -3 052591 bp Feature: gene Location: 3052658-3052996 bp Ori: AST02997.1 Feature: domain Description: gly_Cac_T_rel Location: 3052664-3052994 bp Feature: domain Description: gly_Cac_T_rel Location: 3 052664-3 052994 bp Feature: gene Location: 3053710-3055515 bp Ori: AST02998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054004-3054700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 054004-3 054700 bp Feature: domain Description: HNHc Note: nucleases Location: 3055261-3055399 bp Feature: domain Description: HNHc Note: nucleases Location: 3 055261-3 0553 99 bp Feature: gene Location: 3055615-3056454 bp Feature: domain Description: gly_Cac_T_rel Location: 3055645-3056455 bp Feature: domain Description: gly_Cac_T_rel Location: 3 055645-3 056455 bp Feature: gene Location: 3056668-3057399 bp Ori: AST02999.1 Feature: domain Description: Methyltransf_25 Location: 3056815-3057088 bp Feature: domain Description: Methyltransf_25 Location: 3 056815-3 057088 bp Feature: gene Location: 3971158-3971475 bp Ori: AST03593.1 Feature: domain Description: DUF4870 Location: 3971176-3971452 bp Feature: domain Description: DUF4870 Location: 3 971176-3 971452 bp Feature: gene Location: 3971878-3973431 bp Ori: AST03594.1 Feature: domain Description: PRK10420 Location: 3971881-3973429 bp Feature: domain Description: PRK10420 Location: 3 971881-3 973 429 bp Feature: gene Location: 3973631-3973861 bp Ori: AST04888.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3973679-3973799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 973 679-3 973 799 bp Feature: gene Location: 3973791-3974934 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3973806-3974160 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3 973 806-3 974160 bp Feature: gene Location: 3975338-3975646 bp Feature: gene Location: 5207816-5208721 bp Ori: AST04529.1 Feature: domain Description: caa3_CtaG Location: 5207825-5208665 bp Feature: domain Description: caa3 _CtaG Location: 5207825-5208665 bp Feature: gene Location: 5208954-5209342 bp Feature: gene Location: 5210058-5211890 bp Ori: AST04530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5210358-5211063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52103 58-5211063 bp Feature: domain Description: HNHc Note: nucleases Location: 5211642-5211774 bp Feature: domain Description: HNHc Note: nucleases Location: 5211642-5211774 bp Feature: gene Location: 5212007-5212630 bp Ori: AST04531.1 Feature: domain Description: amiF Location: 5212010-5212625 bp Feature: domain Description: amiF Location: 5212010-5212625 bp Feature: gene Location: 5212696-5214047 bp Feature: domain Description: HTH_28 Location: 5212720-5212861 bp Feature: domain Description: HTH_28 Location: 5212720-5212861 bp Feature: domain Description: HTH_23 Location: 5213191-5213302 bp Feature: domain Description: HTH_23 Location: 5213 191-5213 3 02 bp Feature: domain Description: HTH_21 Location: 5213326-5213482 bp Feature: domain Description: HTH_21 Location: 5213 3 26-5213 482 bp Feature: gene Location: 5508873-5510144 bp Ori: AST04726.1 Feature: domain Description: YnbB Location: 5508876-5510118 bp Feature: domain Description: YnbB Location: 5508876-5510118 bp Feature: gene Location: 5510319-5510708 bp Ori: AST04727.1 Feature: domain Description: HTH_GlnR-like Location: 5510352-5510580 bp Feature: domain Description: HTH_GlnR-like Location: 55103 52-5510580 bp Feature: gene Location: 5511462-5513293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5511762-5512422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5511762-5512422 bp Feature: gene Location: 5513435-5514768 bp Feature: domain Description: GlnA Location: 5513450-5513558 bp Feature: domain Description: GlnA Location: 5513 450-5513 558 bp Feature: gene Location: 5515387-5515710 bp Ori: AST04728.1 Feature: domain Description: PadR Location: 5515399-5515681 bp Feature: domain Description: PadR Location: 55153 99-5515681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ntn_PVA (cd00542), ETR_like (cd05282), RVT-GII, HTH_28 (pfam13518), Tra5 (COG2801), TDH_SDR_e (cd05272), gly_Cac_T_rel (TIGR01825), HNHc (smart00507), Methyltransf_25 (pfam13649), DUF4870 (pfam09685)
PRK10420 (L-lactate permease; Provisional), DEDD_Tnp_IS110 (pfam01548), caa3_CtaG (TIGR02737), amiF (PRK13287), HTH_23 (pfam13384), HTH_21 (pfam13276), YnbB (COG4589), HTH_GlnR-like (cd01105), GlnA (TIGR00653), PadR (pfam03551)

Seq: CP020757.1 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-18, complete sequence (85218 bp)
Overview 1 RT 1: 5544-10158 bp 2 RT 2: 65170-69483 bp Neighborhood of RT #1 [5544, 10158] Phage_int_SAM_1 DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #2 [65170, 69790] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 5544-6382 bp Feature: domain Description: Phage_int_SAM_1 Location: 5559-5805 bp Feature: domain Description: Phage_int_SAM_1 Location: 5559-5805 bp Feature: gene Location: 6754-7173 bp Ori: AST05337.1 Feature: domain Description: DDE_Tnp_1 Location: 6790-6892 bp Feature: domain Description: DDE_Tnp_1 Location: 6790-6892 bp Feature: gene Location: 7290-8597 bp Ori: AST05400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7575-8214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7575-8214 bp Feature: domain Description: GIIM Note: maturase Location: 8289-8514 bp Feature: domain Description: GIIM Note: maturase Location: 8289-8514 bp Feature: gene Location: 8771-8950 bp Feature: gene Location: 9111-10158 bp Feature: gene Location: 65170-66022 bp Feature: gene Location: 66392-66811 bp Ori: AST05393.1 Feature: domain Description: DDE_Tnp_1 Location: 66428-66530 bp Feature: domain Description: DDE_Tnp_1 Location: 664 28-66530 bp Feature: gene Location: 66928-68220 bp Ori: AST05394.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67198-67837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67198-67837 bp Feature: domain Description: GIIM Note: maturase Location: 67912-68137 bp Feature: domain Description: GIIM Note: maturase Location: 67912-68137 bp Feature: gene Location: 68406-68585 bp Feature: gene Location: 68745-69790 bp Feature: domain Description: DDE_Tnp_1 Location: 69099-69483 bp Feature: domain Description: DDE_Tnp_1 Location: 69099-694 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: CP020758.1 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence (73623 bp)
Overview 1 RT 1: 38420-45963 bp Neighborhood of RT #1 [38420, 45963] SXT_TraD RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 38420-40952 bp Feature: gene Location: 41210-41533 bp Ori: AST05430.1 Feature: domain Description: SXT_TraD Location: 41321-41519 bp Feature: domain Description: SXT_TraD Location: 41321-415 19 bp Feature: gene Location: 42249-44078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42549-42861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425 49-42861 bp Feature: domain Description: HNHc Note: nucleases Location: 43830-43962 bp Feature: domain Description: HNHc Note: nucleases Location: 43830-43962 bp Feature: gene Location: 44219-45571 bp Ori: AST05413.1 Feature: domain Description: T4SS-DNA_transf Location: 44225-45296 bp Feature: domain Description: T4SS-DNA_transf Location: 44225 -45 296 bp Feature: gene Location: 45584-45963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SXT_TraD (TIGR03743), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)