myRT

myRT report for GCA_002257605.1_ASM225760v1

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Seq: CP022754.1 Parabacteroides sp. CT06 chromosome, complete genome (5372666 bp)
Overview 1 RT 1: 519174-530547 bp 2 RT 2: 990291-999556 bp 3 RT 3: 2332497-2343506 bp 4 RT 4: 3209354-3219885 bp 5 RT 5: 3475174-3478156 bp Neighborhood of RT #1 [519174, 530615] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM Spc7 PRK13351 Neighborhood of RT #2 [990291, 999558] DUF418 RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Neighborhood of RT #3 [2332497, 2343508] TIR_2 TPR RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Neighborhood of RT #4 [3209354, 3220025] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF4065 Neighborhood of RT #5 [3475174, 3478179] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 519174-519761 bp Ori: AST52250.1 Feature: domain Description: DUF1896 Location: 519339-519759 bp Feature: domain Description: DUF1 896 Location: 51 9339-51 9759 bp Feature: gene Location: 519751-524439 bp Ori: AST52251.1 Feature: domain Description: N6_Mtase Location: 520063-520666 bp Feature: domain Description: N6_Mtase Location: 520063-520666 bp Feature: domain Description: COG4646 Location: 521995-524056 bp Feature: domain Description: COG4646 Location: 521 995-524056 bp Feature: gene Location: 525097-526765 bp Gene: ltrA Feature: domain Description: RVT_N Location: 525151-525394 bp Feature: domain Description: RVT_N Location: 5251 51 -525394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525439-526087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525439-526087 bp Feature: domain Description: GIIM Note: maturase Location: 526141-526372 bp Feature: domain Description: GIIM Note: maturase Location: 5261 41 -526372 bp Feature: gene Location: 526767-528032 bp Ori: AST52252.1 Feature: domain Description: Spc7 Location: 527643-527910 bp Feature: domain Description: Spc7 Location: 527643-52791 0 bp Feature: gene Location: 528690-530615 bp Ori: AST52253.1 Feature: domain Description: PRK13351 Location: 528693-530547 bp Feature: domain Description: PRK1 3351 Location: 528693-530547 bp Feature: gene Location: 990291-990599 bp Ori: AST52656.1 Feature: domain Description: DUF418 Location: 990351-990597 bp Feature: domain Description: DUF41 8 Location: 990351 -990597 bp Feature: gene Location: 990787-992067 bp Feature: gene Location: 992069-993737 bp Gene: ltrA Feature: domain Description: RVT_N Location: 992123-992366 bp Feature: domain Description: RVT_N Location: 9921 23-992366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992411-993059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99241 1 -993059 bp Feature: domain Description: GIIM Note: maturase Location: 993113-993344 bp Feature: domain Description: GIIM Note: maturase Location: 9931 1 3-993344 bp Feature: gene Location: 994416-999116 bp Feature: domain Description: N6_Mtase Location: 994728-995352 bp Feature: domain Description: N6_Mtase Location: 994728-995352 bp Feature: domain Description: COG4646 Location: 996732-998754 bp Feature: domain Description: COG4646 Location: 996732-998754 bp Feature: gene Location: 999106-999558 bp Ori: AST52658.1 Feature: domain Description: DUF1896 Location: 999136-999556 bp Feature: domain Description: DUF1 896 Location: 9991 36-999556 bp Feature: gene Location: 2332497-2334785 bp Ori: AST53681.1 Feature: domain Description: TIR_2 Location: 2332512-2332836 bp Feature: domain Description: TIR_2 Location: 233251 2-2332836 bp Feature: domain Description: TPR Location: 2334276-2334525 bp Feature: domain Description: TPR Location: 2334276-2334525 bp Feature: gene Location: 2334848-2336167 bp Feature: gene Location: 2336286-2337954 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2336340-2336583 bp Feature: domain Description: RVT_N Location: 2336340-2336583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2336628-2337276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2336628-2337276 bp Feature: domain Description: GIIM Note: maturase Location: 2337330-2337561 bp Feature: domain Description: GIIM Note: maturase Location: 2337330-2337561 bp Feature: gene Location: 2338633-2343051 bp Feature: domain Description: N6_Mtase Location: 2338927-2339545 bp Feature: domain Description: N6_Mtase Location: 2338927-2339545 bp Feature: domain Description: COG4646 Location: 2340505-2342548 bp Feature: domain Description: COG4646 Location: 2340505-2342548 bp Feature: gene Location: 2343041-2343508 bp Ori: AST53682.1 Feature: domain Description: DUF1896 Location: 2343086-2343506 bp Feature: domain Description: DUF1 896 Location: 2343086-2343506 bp Feature: gene Location: 3209354-3211243 bp Ori: AST54360.1 Feature: domain Description: KAP_NTPase Location: 3209402-3209489 bp Feature: domain Description: KAP_NTPase Location: 3209402-3209489 bp Feature: domain Description: KAP_NTPase Location: 3209762-3210038 bp Feature: domain Description: KAP_NTPase Location: 3209762-321 0038 bp Feature: gene Location: 3211485-3212582 bp Feature: gene Location: 3212566-3214234 bp Gene: ltrA Feature: domain Description: RVT_N Location: 3212620-3212863 bp Feature: domain Description: RVT_N Location: 321 2620-321 2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3212908-3213556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 2908-321 3556 bp Feature: domain Description: GIIM Note: maturase Location: 3213610-3213841 bp Feature: domain Description: GIIM Note: maturase Location: 321 361 0-321 3841 bp Feature: gene Location: 3214892-3218929 bp Ori: AST54362.1 Feature: domain Description: N6_Mtase Location: 3215384-3215798 bp Feature: domain Description: N6_Mtase Location: 321 5384-321 5798 bp Feature: domain Description: COG4646 Location: 3216581-3218324 bp Feature: domain Description: COG4646 Location: 321 6581 -321 8324 bp Feature: gene Location: 3219468-3220025 bp Ori: AST54363.1 Feature: domain Description: DUF4065 Location: 3219558-3219885 bp Feature: domain Description: DUF4065 Location: 321 9558-321 9885 bp Feature: gene Location: 3475174-3475524 bp Ori: AST54609.1 Feature: domain Description: DUF4133 Location: 3475189-3475459 bp Feature: domain Description: DUF41 33 Location: 34751 89-3475459 bp Feature: gene Location: 3475535-3475777 bp Ori: AST54610.1 Feature: domain Description: DUF4134 Location: 3475682-3475772 bp Feature: domain Description: DUF41 34 Location: 3475682-3475772 bp Feature: gene Location: 3475782-3477431 bp Ori: AST54611.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3475839-3476082 bp Feature: domain Description: RVT_N Location: 3475839-3476082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3476127-3476775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34761 27-3476775 bp Feature: domain Description: GIIM Note: maturase Location: 3476832-3477063 bp Feature: domain Description: GIIM Note: maturase Location: 3476832-3477063 bp Feature: gene Location: 3477725-3478024 bp Feature: gene Location: 3478033-3478179 bp Ori: AST54612.1 Feature: domain Description: DUF4134 Location: 3478039-3478156 bp Feature: domain Description: DUF41 34 Location: 3478039-34781 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Spc7 (smart00787), PRK13351 (elongation factor G-like protein), DUF418 (pfam04235), TIR_2 (pfam13676)
TPR (smart00028), KAP_NTPase (pfam07693), DUF4065 (pfam13274), DUF4133 (pfam13571), DUF4134 (pfam13572)