myRT

myRT report for GCA_002258055.2_ASM225805v2

Download annotations/find similar RTs

Seq: CP028804.1 Klebsiella pneumoniae strain WCHKP7E2 plasmid pCMY2_085072, complete sequence (323934 bp)
Overview 1 RT 1: 190821-194083 bp Neighborhood of RT #1 [190821, 194083] PRK10276 RVT-GII Feature: gene Location: 190821-191246 bp Ori: AWA65886.1 Feature: domain Description: PRK10276 Location: 190824-191232 bp Feature: domain Description: PRK1 0276 Location: 1 90824-1 91 232 bp Feature: gene Location: 191401-191652 bp Feature: gene Location: 191652-193136 bp Ori: AWA65888.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192054-192744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92054-1 92744 bp Feature: gene Location: 193370-193600 bp Feature: gene Location: 193862-194083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: CP028806.1 Klebsiella pneumoniae strain WCHKP7E2 chromosome, complete genome (5371030 bp)
Overview 1 RT 1: 1808448-1814464 bp 2 RT 2: 3181034-3185133 bp 3 RT 3: 3298909-3303410 bp 4 RT 4: 4003578-4006358 bp Neighborhood of RT #1 [1808448, 1814464] Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-Retrons AAA_15 Neighborhood of RT #2 [3181034, 3185144] umuC PRK10276 RVT-GII DinI Neighborhood of RT #3 [3298909, 3303472] HTH_XRE RVT-UG2 endolysin_R21_like Neighborhood of RT #4 [4003578, 4006358] PRK10276 PRK10276 RVT-GII Feature: gene Location: 1808448-1808603 bp Feature: gene Location: 1808856-1809553 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1808862-1808964 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1808862 -1808964 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1808985-1809120 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1808985-180912 0 bp Feature: gene Location: 1809860-1810960 bp Ori: AWA67873.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1810040-1810574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1810040-1810574 bp Feature: gene Location: 1811075-1813351 bp Ori: AWA67874.1 Feature: domain Description: AAA_15 Location: 1811108-1812116 bp Feature: domain Description: AAA_15 Location: 1811108-1812 116 bp Feature: gene Location: 1814234-1814464 bp Feature: gene Location: 3181034-3182299 bp Ori: AWA69161.1 Feature: domain Description: umuC Location: 3181037-3182297 bp Feature: domain Description: umuC Location: 3181037-3182 2 97 bp Feature: gene Location: 3182302-3182721 bp Ori: AWA69162.1 Feature: domain Description: PRK10276 Location: 3182305-3182716 bp Feature: domain Description: PRK102 76 Location: 3182 305-3182 716 bp Feature: gene Location: 3182800-3184284 bp Ori: AWA69163.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3183202-3183892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832 02 -3183892 bp Feature: gene Location: 3184284-3184535 bp Feature: gene Location: 3184902-3185144 bp Ori: AWA69165.1 Feature: domain Description: DinI Location: 3184953-3185133 bp Feature: domain Description: DinI Location: 3184953-3185133 bp Feature: gene Location: 3298909-3299274 bp Ori: AWA69279.1 Feature: domain Description: HTH_XRE Location: 3299110-3299266 bp Feature: domain Description: HTH_XRE Location: 32 99110-32 992 66 bp Feature: gene Location: 3299308-3300129 bp Feature: gene Location: 3300640-3301926 bp Ori: AWA69281.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3300841-3301633 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3300841-3301633 bp Feature: gene Location: 3302091-3302990 bp Feature: gene Location: 3303020-3303472 bp Ori: AWA69283.1 Feature: domain Description: endolysin_R21_like Location: 3303035-3303410 bp Feature: domain Description: endolysin_R2 1_like Location: 3303035-3303410 bp Feature: gene Location: 4003578-4003895 bp Ori: AWA69906.1 Feature: domain Description: PRK10276 Location: 4003584-4003698 bp Feature: domain Description: PRK102 76 Location: 4003584-4003698 bp Feature: domain Description: PRK10276 Location: 4003725-4003794 bp Feature: domain Description: PRK102 76 Location: 400372 5-4003794 bp Feature: gene Location: 4003895-4004134 bp Feature: gene Location: 4004212-4005696 bp Ori: AWA69908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4004614-4005304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4004614-4005304 bp Feature: gene Location: 4005696-4005947 bp Feature: gene Location: 4006149-4006358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), HTH_XRE (smart00530), RVT-UG2
endolysin_R21_like

Seq: CP028805.1 Klebsiella pneumoniae strain WCHKP7E2 plasmid pKPC2_085072, complete sequence (131028 bp)
Overview 1 RT 1: 2986-6524 bp 2 RT 2: 21039-25121 bp Neighborhood of RT #1 [2986, 6524] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [21039, 25258] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 2986-3673 bp Feature: domain Description: InsE Location: 2995-3244 bp Feature: domain Description: InsE Location: 2995-3 244 bp Feature: gene Location: 3600-4037 bp Feature: gene Location: 4331-5854 bp Ori: AWA66063.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4604-5336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4604-53 3 6 bp Feature: domain Description: GIIM Note: maturase Location: 5411-5609 bp Feature: domain Description: GIIM Note: maturase Location: 5411-5609 bp Feature: gene Location: 5935-6114 bp Feature: domain Description: PHA02517 Location: 5938-6115 bp Feature: domain Description: PHA02517 Location: 593 8-6115 bp Feature: gene Location: 6396-6524 bp Feature: gene Location: 21039-21470 bp Ori: AWA66079.1 Feature: domain Description: PRK10276 Location: 21090-21453 bp Feature: domain Description: PRK10276 Location: 21090-21453 bp Feature: gene Location: 21629-21880 bp Feature: gene Location: 21880-23364 bp Ori: AWA66081.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22282-22972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22282-22972 bp Feature: gene Location: 23613-24584 bp Ori: AWA66082.1 Feature: domain Description: StbA Location: 23616-24561 bp Feature: domain Description: StbA Location: 23 616-24561 bp Feature: gene Location: 24587-25258 bp Ori: AWA66083.1 Feature: domain Description: Plasmid_stab_B Location: 24602-24809 bp Feature: domain Description: Plasmid_stab_B Location: 24602-24809 bp Feature: domain Description: Plasmid_stab_B Location: 24914-25121 bp Feature: domain Description: Plasmid_stab_B Location: 24914-25121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)