myRT

myRT report for GCA_002258145.3_ASM225814v3

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Seq: CP027067.1 Klebsiella pneumoniae strain WCHKP8F4 plasmid pKPC2_095084, complete sequence (120074 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 71089-75171 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [71089, 75308] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: AVJ62941.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1 380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: AVJ62943.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 281 64-28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 71089-71520 bp Ori: AVJ62989.1 Feature: domain Description: PRK10276 Location: 71140-71503 bp Feature: domain Description: PRK1 0276 Location: 71 1 40-71 503 bp Feature: gene Location: 71679-71930 bp Feature: gene Location: 71930-73414 bp Ori: AVJ62991.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72332-73022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72332-73022 bp Feature: gene Location: 73663-74634 bp Ori: AVJ62992.1 Feature: domain Description: StbA Location: 73666-74611 bp Feature: domain Description: StbA Location: 73666-7461 1 bp Feature: gene Location: 74637-75308 bp Ori: AVJ62993.1 Feature: domain Description: Plasmid_stab_B Location: 74652-74859 bp Feature: domain Description: Plasmid_stab_B Location: 74652-74859 bp Feature: domain Description: Plasmid_stab_B Location: 74964-75171 bp Feature: domain Description: Plasmid_stab_B Location: 74964-751 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP027068.2 Klebsiella pneumoniae strain WCHKP8F4 chromosome, complete genome (5365113 bp)
Overview 1 RT 1: 1231838-1236818 bp 2 RT 2: 1395970-1398656 bp 3 RT 3: 1847648-1852520 bp 4 RT 4: 1868261-1874523 bp 5 RT 5: 3040148-3042656 bp 6 RT 6: 3119831-3123969 bp 7 RT 7: 3272322-3276421 bp 8 RT 8: 3345154-3349416 bp 9 RT 9: 3671106-3675944 bp Neighborhood of RT #1 [1231838, 1236818] Phage_GPA RVT-GII Neighborhood of RT #2 [1395970, 1398656] DinI RVT-GII Neighborhood of RT #3 [1847648, 1852534] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1868261, 1874523] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3040148, 3042656] RVT-GII Neighborhood of RT #6 [3119831, 3123969] umuC PRK10276 RVT-GII Neighborhood of RT #7 [3272322, 3276432] umuC PRK10276 RVT-GII DinI Neighborhood of RT #8 [3345154, 3349454] PRK10597 RVT-GII PRK05318 Neighborhood of RT #9 [3671106, 3675994] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1231838-1234222 bp Ori: AVJ64263.1 Feature: domain Description: Phage_GPA Location: 1232402-1233368 bp Feature: domain Description: Phage_GPA Location: 12 32 402 -12 33368 bp Feature: gene Location: 1234452-1234703 bp Feature: gene Location: 1234703-1236187 bp Ori: AVJ64265.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1235105-1235795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 35105-12 35795 bp Feature: gene Location: 1236284-1236622 bp Feature: gene Location: 1236615-1236818 bp Feature: gene Location: 1395970-1396203 bp Ori: AVJ64424.1 Feature: domain Description: DinI Location: 1396015-1396198 bp Feature: domain Description: DinI Location: 1396015-1396198 bp Feature: gene Location: 1396215-1396403 bp Feature: gene Location: 1396511-1397995 bp Ori: AVJ64426.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396913-1397603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396913-1397603 bp Feature: gene Location: 1397995-1398246 bp Feature: gene Location: 1398399-1398656 bp Feature: gene Location: 1847648-1848817 bp Ori: AVJ64806.1 Feature: domain Description: dacD Location: 1847657-1848812 bp Feature: domain Description: dacD Location: 1847657-1848812 bp Feature: gene Location: 1849087-1849338 bp Feature: gene Location: 1849338-1850822 bp Ori: AVJ64808.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849740-1850430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849740-1850430 bp Feature: gene Location: 1850904-1851377 bp Ori: AVJ64809.1 Feature: domain Description: PRK10016 Location: 1850907-1851366 bp Feature: domain Description: PRK10016 Location: 1850907-1851366 bp Feature: gene Location: 1851476-1852534 bp Ori: AVJ64810.1 Feature: domain Description: YccC Location: 1851482-1852520 bp Feature: domain Description: YccC Location: 1851482 -1852 52 0 bp Feature: gene Location: 1868261-1869364 bp Ori: AVJ64830.1 Feature: domain Description: STKc_PknB_like Location: 1868393-1868834 bp Feature: domain Description: STKc_PknB_like Location: 1868393-1868834 bp Feature: gene Location: 1869434-1869676 bp Feature: gene Location: 1869923-1871023 bp Ori: AVJ64831.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870106-1870634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870106-1870634 bp Feature: gene Location: 1871138-1873414 bp Ori: AVJ64832.1 Feature: domain Description: AAA_15 Location: 1871171-1872179 bp Feature: domain Description: AAA_15 Location: 1871171-1872 179 bp Feature: gene Location: 1874293-1874523 bp Feature: gene Location: 3040148-3040432 bp Feature: gene Location: 3040446-3040517 bp Feature: gene Location: 3040510-3041994 bp Ori: AVJ65918.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040912-3041602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040912 -3041602 bp Feature: gene Location: 3041994-3042245 bp Feature: gene Location: 3042447-3042656 bp Feature: gene Location: 3119831-3121096 bp Ori: AVJ66009.1 Feature: domain Description: umuC Location: 3119834-3121094 bp Feature: domain Description: umuC Location: 3119834-312 1094 bp Feature: gene Location: 3121098-3121517 bp Ori: AVJ66010.1 Feature: domain Description: PRK10276 Location: 3121101-3121512 bp Feature: domain Description: PRK102 76 Location: 312 1101-312 1512 bp Feature: gene Location: 3121597-3123081 bp Ori: AVJ66011.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3121999-3122689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 1999-312 2 689 bp Feature: gene Location: 3123081-3123332 bp Feature: gene Location: 3123880-3123969 bp Feature: gene Location: 3272322-3273587 bp Ori: AVJ66159.1 Feature: domain Description: umuC Location: 3272325-3273585 bp Feature: domain Description: umuC Location: 32 72 32 5-32 73585 bp Feature: gene Location: 3273590-3274009 bp Ori: AVJ66160.1 Feature: domain Description: PRK10276 Location: 3273593-3274004 bp Feature: domain Description: PRK102 76 Location: 32 73593-32 74004 bp Feature: gene Location: 3274088-3275572 bp Ori: AVJ66161.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3274490-3275180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 74490-32 75180 bp Feature: gene Location: 3275572-3275823 bp Feature: gene Location: 3276190-3276432 bp Ori: AVJ66163.1 Feature: domain Description: DinI Location: 3276241-3276421 bp Feature: domain Description: DinI Location: 32 762 41-32 7642 1 bp Feature: gene Location: 3345154-3345444 bp Feature: gene Location: 3345456-3345689 bp Ori: AVJ66235.1 Feature: domain Description: PRK10597 Location: 3345459-3345684 bp Feature: domain Description: PRK10597 Location: 3345459-3345684 bp Feature: gene Location: 3345768-3347252 bp Ori: AVJ66236.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346170-3346860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346170-3346860 bp Feature: gene Location: 3347252-3347503 bp Feature: gene Location: 3348093-3349454 bp Ori: AVJ66238.1 Feature: domain Description: PRK05318 Location: 3348117-3349416 bp Feature: domain Description: PRK05318 Location: 3348117-3349416 bp Feature: gene Location: 3671106-3671984 bp Ori: AVJ66536.1 Feature: domain Description: Phage_CI_repr Location: 3671133-3671316 bp Feature: domain Description: Phage_CI_repr Location: 3671133-3671316 bp Feature: domain Description: Phage_CI_repr Location: 3671445-3671637 bp Feature: domain Description: Phage_CI_repr Location: 3671445-3671637 bp Feature: domain Description: Phage_CI_C Location: 3671664-3671958 bp Feature: domain Description: Phage_CI_C Location: 3671664-3671958 bp Feature: gene Location: 3671996-3672940 bp Feature: gene Location: 3673039-3674523 bp Ori: AVJ66538.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673441-3674131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673441-3674131 bp Feature: gene Location: 3674523-3674774 bp Feature: gene Location: 3674942-3675994 bp Ori: AVJ66540.1 Feature: domain Description: int Location: 3674945-3675944 bp Feature: domain Description: int Location: 3674945-3675944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)