myRT

myRT report for GCA_002269325.1_ASM226932v1

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Seq: CP022912.1 Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome (4785142 bp)
Overview 1 RT 1: 137734-142238 bp 2 RT 2: 2077761-2080973 bp 3 RT 3: 4327520-4331898 bp Neighborhood of RT #1 [137734, 142261] InsE PHA02517 RVT-GII GIIM PHA02517 PRK10681 Neighborhood of RT #2 [2077761, 2081038] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [4327520, 4331898] TraD PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 137734-138060 bp Feature: domain Description: InsE Location: 137737-138058 bp Feature: domain Description: InsE Location: 1 37737-1 38058 bp Feature: gene Location: 138060-138539 bp Feature: domain Description: PHA02517 Location: 138120-138474 bp Feature: domain Description: PHA0251 7 Location: 1 381 20-1 38474 bp Feature: gene Location: 139131-140654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139404-140136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39404-1 401 36 bp Feature: domain Description: GIIM Note: maturase Location: 140211-140409 bp Feature: domain Description: GIIM Note: maturase Location: 1 4021 1 -1 40409 bp Feature: gene Location: 140831-141217 bp Feature: domain Description: PHA02517 Location: 140834-141215 bp Feature: domain Description: PHA0251 7 Location: 1 40834-1 41 21 5 bp Feature: gene Location: 141479-142261 bp Feature: domain Description: PRK10681 Location: 141482-142238 bp Feature: domain Description: PRK1 0681 Location: 1 41 482-1 42238 bp Feature: gene Location: 2077761-2077931 bp Feature: gene Location: 2077959-2078375 bp Feature: domain Description: PHA02517 Location: 2077962-2078367 bp Feature: domain Description: PHA0251 7 Location: 2077962-2078367 bp Feature: gene Location: 2078498-2080021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078771-2079503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078771 -2079503 bp Feature: domain Description: GIIM Note: maturase Location: 2079578-2079776 bp Feature: domain Description: GIIM Note: maturase Location: 2079578-2079776 bp Feature: gene Location: 2079975-2080400 bp Feature: gene Location: 2080613-2081038 bp Feature: domain Description: PHA02517 Location: 2080634-2080973 bp Feature: domain Description: PHA0251 7 Location: 2080634-2080973 bp Feature: gene Location: 4327520-4327831 bp Feature: domain Description: TraD Location: 4327634-4327808 bp Feature: domain Description: TraD Location: 4327634-4327808 bp Feature: gene Location: 4328639-4330141 bp Feature: domain Description: PRK13889 Location: 4328642-4329221 bp Feature: domain Description: PRK1 3889 Location: 4328642-4329221 bp Feature: gene Location: 4330218-4331318 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4330359-4330911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4330359-433091 1 bp Feature: gene Location: 4331311-4331592 bp Feature: domain Description: HTH_XRE Location: 4331326-4331491 bp Feature: domain Description: HTH_XRE Location: 4331 326-4331 491 bp Feature: gene Location: 4331683-4331898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10681 (DNA-binding transcriptional repressor DeoR; Provisional), TraD (pfam06412), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: CP022913.1 Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence (63392 bp)
Overview 1 RT 1: 1759-5728 bp Neighborhood of RT #1 [1759, 5838] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 1759-2085 bp Feature: domain Description: InsE Location: 1762-2083 bp Feature: domain Description: InsE Location: 1762 -2 083 bp Feature: gene Location: 2085-2564 bp Feature: domain Description: PHA02517 Location: 2145-2499 bp Feature: domain Description: PHA02 517 Location: 2 145-2 499 bp Feature: gene Location: 3156-4679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3429-4161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 9-4161 bp Feature: domain Description: GIIM Note: maturase Location: 4236-4434 bp Feature: domain Description: GIIM Note: maturase Location: 42 36-4434 bp Feature: gene Location: 4796-5242 bp Feature: domain Description: PHA02517 Location: 4799-5240 bp Feature: domain Description: PHA02 517 Location: 4799-52 40 bp Feature: gene Location: 5245-5838 bp Feature: domain Description: COG3547 Location: 5260-5728 bp Feature: domain Description: COG3547 Location: 52 60-572 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: CP022914.1 Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed2, complete sequence (117021 bp)
Overview 1 RT 1: 101605-105359 bp Neighborhood of RT #1 [101605, 105394] PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 101605-101733 bp Feature: gene Location: 101823-102062 bp Feature: domain Description: PHA02517 Location: 101826-101997 bp Feature: domain Description: PHA02517 Location: 101826-101997 bp Feature: gene Location: 102654-104177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102927-103659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102927-103 659 bp Feature: domain Description: GIIM Note: maturase Location: 103734-103932 bp Feature: domain Description: GIIM Note: maturase Location: 103 73 4-103 93 2 bp Feature: gene Location: 104294-104740 bp Feature: domain Description: PHA02517 Location: 104297-104738 bp Feature: domain Description: PHA02517 Location: 104297-10473 8 bp Feature: gene Location: 104897-105394 bp Feature: domain Description: COG3547 Location: 104906-105359 bp Feature: domain Description: COG3 547 Location: 104906-1053 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )