myRT

myRT report for GCA_002278075.1_ASM227807v1

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Seq: CP022989.1 Paraburkholderia sp. BN5 chromosome 1, complete sequence (4378888 bp)
Overview 1 RT 1: 19389-28631 bp 2 RT 2: 2856047-2865850 bp Neighborhood of RT #1 [19389, 28681] RVT-UG7 SSL2 SSL2 DUF4236 LprI Neighborhood of RT #2 [2856047, 2865861] RMtype1_S_FclI-TRD1-CR1_like RMtype1_S_FclI-TRD1-CR1_like COG0610 RVT-UG5 T5orf172 IS285 Feature: gene Location: 19389-19685 bp Feature: gene Location: 20407-21102 bp Feature: gene Location: 21327-22898 bp Ori: ASV96717.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21696-22113 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21 696-221 1 3 bp Feature: gene Location: 22991-26284 bp Ori: ASV96718.1 Feature: domain Description: SSL2 Location: 23396-24044 bp Feature: domain Description: SSL2 Location: 23396-24044 bp Feature: domain Description: SSL2 Location: 24182-24386 bp Feature: domain Description: SSL2 Location: 241 82-24386 bp Feature: gene Location: 26957-28681 bp Ori: ASV96719.1 Feature: domain Description: DUF4236 Location: 26966-27116 bp Feature: domain Description: DUF4236 Location: 26966-271 1 6 bp Feature: domain Description: LprI Location: 28403-28631 bp Feature: domain Description: LprI Location: 28403-28631 bp Feature: gene Location: 2856047-2857354 bp Ori: ASV98997.1 Feature: domain Description: RMtype1_S_FclI-TRD1-CR1_like Location: 2856323-2856620 bp Feature: domain Description: RMtype1 _S_FclI-TRD1 -CR1 _like Location: 2856323-2856620 bp Feature: domain Description: RMtype1_S_FclI-TRD1-CR1_like Location: 2856758-2857298 bp Feature: domain Description: RMtype1 _S_FclI-TRD1 -CR1 _like Location: 2856758-2857298 bp Feature: gene Location: 2857385-2860465 bp Ori: ASV98998.1 Feature: domain Description: COG0610 Location: 2857391-2860376 bp Feature: domain Description: COG061 0 Location: 2857391 -2860376 bp Feature: gene Location: 2860564-2863776 bp Ori: ASV98999.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2861092-2861596 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2861 092-2861 596 bp Feature: gene Location: 2863967-2864527 bp Ori: ASV99000.1 Feature: domain Description: T5orf172 Location: 2864030-2864243 bp Feature: domain Description: T5orf1 72 Location: 2864030-2864243 bp Feature: gene Location: 2864599-2865861 bp Ori: ASW00403.1 Feature: domain Description: IS285 Location: 2864716-2865850 bp Feature: domain Description: IS285 Location: 286471 6-2865850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, SSL2 (COG1061), DUF4236 (pfam14020), LprI (pfam07007), RMtype1_S_FclI-TRD1-CR1_like (cd17254), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, T5orf172 (smart00974), IS285 (COG3328)

Seq: CP022993.1 Paraburkholderia sp. BN5 plasmid pBN3, complete sequence (162757 bp)
Overview 1 RT 1: 20905-32225 bp 2 RT 2: 36107-44300 bp 3 RT 3: 102894-110676 bp Neighborhood of RT #1 [20905, 32440] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM Phage_int_SAM_1 Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [36107, 44365] GntR COG3547 RVT_N RVT-GII RVT-GII GIIM FMN_nitrolo PBP1_ABC_ligand_binding_like_11 Neighborhood of RT #3 [102894, 110891] Rieske_RO_Alpha_AntDO RHO_alpha_C_AntDO-like IS285 RVT-GII GIIM RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 20905-22056 bp Ori: ASW04131.1 Feature: domain Description: Zn_Tnp_IS91 Location: 20935-21211 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 0935-2 12 11 bp Feature: domain Description: Y2_Tnp Location: 21337-21895 bp Feature: domain Description: Y2 _Tnp Location: 2 1337-2 1895 bp Feature: gene Location: 22065-22943 bp Ori: ASW04132.1 Feature: domain Description: Phage_int_SAM_4 Location: 22077-22323 bp Feature: domain Description: Phage_int_SAM_4 Location: 2 2 077-2 2 32 3 bp Feature: domain Description: INT_IntI_C Location: 22359-22848 bp Feature: domain Description: INT_IntI_C Location: 2 2 359-2 2 848 bp Feature: gene Location: 23556-24893 bp Ori: ASW04133.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23907-24528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3907-2 452 8 bp Feature: domain Description: GIIM Note: maturase Location: 24579-24792 bp Feature: domain Description: GIIM Note: maturase Location: 2 4579-2 4792 bp Feature: gene Location: 25018-26262 bp Ori: ASW04134.1 Feature: domain Description: Phage_int_SAM_1 Location: 25099-25231 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 5099-2 52 31 bp Feature: domain Description: Phage_int_SAM_1 Location: 25390-25624 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 5390-2 562 4 bp Feature: domain Description: INT_RitA_C_like Location: 25717-26239 bp Feature: domain Description: INT_RitA_C_like Location: 2 5717-2 62 39 bp Feature: gene Location: 26259-27218 bp Ori: ASW04247.1 Feature: domain Description: INT_RitB_C_like Location: 26589-27174 bp Feature: domain Description: INT_RitB_C_like Location: 2 6589-2 7174 bp Feature: gene Location: 27211-28215 bp Ori: ASW04135.1 Feature: domain Description: Phage_int_SAM_1 Location: 27262-27517 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 72 62 -2 7517 bp Feature: domain Description: INT_RitC_C_like Location: 27598-28141 bp Feature: domain Description: INT_RitC_C_like Location: 2 7598-2 8141 bp Feature: gene Location: 28398-29735 bp Ori: ASW04136.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28749-29370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8749-2 9370 bp Feature: domain Description: GIIM Note: maturase Location: 29421-29634 bp Feature: domain Description: GIIM Note: maturase Location: 2 942 1-2 9634 bp Feature: gene Location: 30348-31226 bp Ori: ASW04137.1 Feature: domain Description: Phage_int_SAM_4 Location: 30360-30606 bp Feature: domain Description: Phage_int_SAM_4 Location: 30360-30606 bp Feature: domain Description: INT_IntI_C Location: 30642-31131 bp Feature: domain Description: INT_IntI_C Location: 30642 -31131 bp Feature: gene Location: 31235-32440 bp Ori: ASW04138.1 Feature: domain Description: Zn_Tnp_IS91 Location: 31265-31541 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 65-31541 bp Feature: domain Description: Y2_Tnp Location: 31667-32225 bp Feature: domain Description: Y2 _Tnp Location: 31667-32 2 2 5 bp Feature: gene Location: 36107-36793 bp Ori: ASW04142.1 Feature: domain Description: GntR Location: 36128-36764 bp Feature: domain Description: GntR Location: 3612 8-36764 bp Feature: gene Location: 36948-38294 bp Ori: ASW04143.1 Feature: domain Description: COG3547 Location: 37002-38133 bp Feature: domain Description: COG3547 Location: 37002 -38133 bp Feature: gene Location: 38345-39043 bp Ori: ASW04144.1 Feature: domain Description: RVT_N Location: 38399-38642 bp Feature: domain Description: RVT_N Location: 38399-38642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38687-39038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38687-39038 bp Feature: gene Location: 39591-40841 bp Ori: ASW04145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39795-40455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39795-40455 bp Feature: domain Description: GIIM Note: maturase Location: 40536-40767 bp Feature: domain Description: GIIM Note: maturase Location: 40536-40767 bp Feature: gene Location: 41827-43107 bp Ori: ASW04146.1 Feature: domain Description: FMN_nitrolo Location: 41842-43093 bp Feature: domain Description: FMN_nitrolo Location: 41842 -43093 bp Feature: gene Location: 43148-44365 bp Ori: ASW04147.1 Feature: domain Description: PBP1_ABC_ligand_binding_like_11 Location: 43244-44300 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_11 Location: 432 44-44300 bp Feature: gene Location: 102894-104216 bp Ori: ASW04193.1 Feature: domain Description: Rieske_RO_Alpha_AntDO Location: 102978-103377 bp Feature: domain Description: Rieske_RO_Alpha_AntDO Location: 102 978-103377 bp Feature: domain Description: RHO_alpha_C_AntDO-like Location: 103473-104163 bp Feature: domain Description: RHO_alpha_C_AntDO-like Location: 103473-104163 bp Feature: gene Location: 104406-104882 bp Feature: domain Description: IS285 Location: 104409-104781 bp Feature: domain Description: IS2 85 Location: 104409-104781 bp Feature: gene Location: 104990-106327 bp Ori: ASW04194.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105341-105962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105341-105962 bp Feature: domain Description: GIIM Note: maturase Location: 106013-106226 bp Feature: domain Description: GIIM Note: maturase Location: 106013-1062 2 6 bp Feature: gene Location: 106849-108186 bp Ori: ASW04195.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107200-107821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072 00-10782 1 bp Feature: domain Description: GIIM Note: maturase Location: 107872-108085 bp Feature: domain Description: GIIM Note: maturase Location: 107872 -108085 bp Feature: gene Location: 108799-109677 bp Ori: ASW04196.1 Feature: domain Description: Phage_int_SAM_4 Location: 108811-109057 bp Feature: domain Description: Phage_int_SAM_4 Location: 108811-109057 bp Feature: domain Description: INT_IntI_C Location: 109093-109582 bp Feature: domain Description: INT_IntI_C Location: 109093-109582 bp Feature: gene Location: 109686-110891 bp Ori: ASW04197.1 Feature: domain Description: Zn_Tnp_IS91 Location: 109716-109992 bp Feature: domain Description: Zn_Tnp_IS91 Location: 109716-109992 bp Feature: domain Description: Y2_Tnp Location: 110118-110676 bp Feature: domain Description: Y2 _Tnp Location: 110118-110676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182)
GntR (pfam00392), COG3547 (Transposase ), RVT_N (pfam13655), FMN_nitrolo (TIGR03860), PBP1_ABC_ligand_binding_like_11, Rieske_RO_Alpha_AntDO (cd03538), RHO_alpha_C_AntDO-like (cd08879), IS285 (COG3328)