myRT

myRT report for GCA_002278135.2_ASM227813v2

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Seq: CP029425.1 Bradyrhizobium ottawaense strain OO99 chromosome, complete genome (8606328 bp)
Overview 1 RT 1: 604588-610663 bp 2 RT 2: 951883-962590 bp 3 RT 3: 1664308-1669367 bp 4 RT 4: 2939274-2944543 bp 5 RT 5: 3138076-3147242 bp 6 RT 6: 3236671-3239781 bp 7 RT 7: 3245461-3250216 bp 8 RT 8: 6025025-6034408 bp Neighborhood of RT #1 [604588, 610663] rve HTH_Tnp_1 RVT-GII Neighborhood of RT #2 [951883, 962595] CpaD RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII IS285 IS285 RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #3 [1664308, 1669375] RVT-Retrons DUF4263 YjgF_YER057c_UK114_like_2 Neighborhood of RT #4 [2939274, 2945277] TPR_12 TPR_12 TPR_12 RVT-Retrons YafK Neighborhood of RT #5 [3138076, 3147256] rve RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM DUF772 DDE_Tnp_1 DDE_Tnp_1 HU_IHF Neighborhood of RT #6 [3236671, 3239781] MmsB RVT-GII RVT-GII DDE_Tnp_1_4 Neighborhood of RT #7 [3245461, 3250221] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 INT_RitC_C_like Neighborhood of RT #8 [6025025, 6034428] thiL OVP1 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM PBP2_Bug_TTT BamE Feature: gene Location: 604588-606138 bp Ori: AWL91332.1 Feature: domain Description: rve Location: 605005-605398 bp Feature: domain Description: rve Location: 605005-605398 bp Feature: gene Location: 606401-607505 bp Feature: domain Description: HTH_Tnp_1 Location: 606407-606614 bp Feature: domain Description: HTH_Tnp_1 Location: 606407-60661 4 bp Feature: gene Location: 607682-608922 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607883-608402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607883-608402 bp Feature: gene Location: 608919-609101 bp Feature: gene Location: 610430-610663 bp Feature: gene Location: 951883-952545 bp Ori: AWL91567.1 Feature: domain Description: CpaD Location: 951916-952456 bp Feature: domain Description: CpaD Location: 951 91 6-952456 bp Feature: gene Location: 952741-955056 bp Feature: gene Location: 955349-956020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955352-955655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955352-955655 bp Feature: gene Location: 956128-956457 bp Ori: AWL91569.1 Feature: domain Description: PHA00617 Location: 956254-956440 bp Feature: domain Description: PHA0061 7 Location: 956254-956440 bp Feature: gene Location: 956598-958277 bp Feature: domain Description: Resolvase Location: 956610-957051 bp Feature: domain Description: Resolvase Location: 95661 0-957051 bp Feature: domain Description: Recombinase Location: 957138-957498 bp Feature: domain Description: Recombinase Location: 9571 38-957498 bp Feature: domain Description: Zn_ribbon_recom Location: 957540-957726 bp Feature: domain Description: Zn_ribbon_recom Location: 957540-957726 bp Feature: gene Location: 958254-958994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958608-958989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958608-958989 bp Feature: gene Location: 959264-959707 bp Feature: domain Description: IS285 Location: 959267-959342 bp Feature: domain Description: IS285 Location: 959267-959342 bp Feature: domain Description: IS285 Location: 959579-959705 bp Feature: domain Description: IS285 Location: 959579-959705 bp Feature: gene Location: 959965-960424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960184-960283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9601 84-960283 bp Feature: gene Location: 960479-961210 bp Ori: AWL91570.1 Feature: domain Description: IstB_IS21_ATP Location: 960500-960584 bp Feature: domain Description: IstB_IS21 _ATP Location: 960500-960584 bp Feature: domain Description: IstB_IS21 Location: 960590-961037 bp Feature: domain Description: IstB_IS21 Location: 960590-961 037 bp Feature: gene Location: 961219-962595 bp Feature: domain Description: COG4584 Location: 961315-962116 bp Feature: domain Description: COG4584 Location: 961 31 5-9621 1 6 bp Feature: domain Description: COG4584 Location: 962146-962590 bp Feature: domain Description: COG4584 Location: 9621 46-962590 bp Feature: gene Location: 1664308-1664763 bp Feature: gene Location: 1665349-1665570 bp Feature: gene Location: 1665707-1667425 bp Ori: AWL92117.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1665842-1666475 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 665842-1 666475 bp Feature: gene Location: 1667514-1668677 bp Ori: AWL97950.1 Feature: domain Description: DUF4263 Location: 1668090-1668621 bp Feature: domain Description: DUF4263 Location: 1 668090-1 668621 bp Feature: gene Location: 1669025-1669375 bp Ori: AWL92118.1 Feature: domain Description: YjgF_YER057c_UK114_like_2 Location: 1669061-1669367 bp Feature: domain Description: YjgF_YER057c_UK1 1 4_like_2 Location: 1 669061 -1 669367 bp Feature: gene Location: 2939274-2940386 bp Ori: AWL93149.1 Feature: domain Description: TPR_12 Location: 2939361-2939472 bp Feature: domain Description: TPR_1 2 Location: 2939361 -2939472 bp Feature: domain Description: TPR_12 Location: 2939640-2939751 bp Feature: domain Description: TPR_1 2 Location: 2939640-2939751 bp Feature: domain Description: TPR_12 Location: 2940012-2940225 bp Feature: domain Description: TPR_1 2 Location: 294001 2-2940225 bp Feature: gene Location: 2940413-2940853 bp Feature: gene Location: 2942296-2942910 bp Ori: AWL93151.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2942473-2942830 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2942473-2942830 bp Feature: gene Location: 2943147-2943550 bp Feature: gene Location: 2943700-2945277 bp Ori: AWL93152.1 Feature: domain Description: YafK Location: 2943757-2944543 bp Feature: domain Description: YafK Location: 2943757-2944543 bp Feature: gene Location: 3138076-3138484 bp Feature: gene Location: 3138625-3140136 bp Ori: AWL93328.1 Feature: domain Description: rve Location: 3139132-3139453 bp Feature: domain Description: rve Location: 31 391 32-31 39453 bp Feature: gene Location: 3141420-3142148 bp Ori: AWL98080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141756-3142146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 41 756-31 421 46 bp Feature: gene Location: 3142137-3143795 bp Feature: domain Description: Resolvase Location: 3142149-3142590 bp Feature: domain Description: Resolvase Location: 31 421 49-31 42590 bp Feature: domain Description: Recombinase Location: 3142677-3143037 bp Feature: domain Description: Recombinase Location: 31 42677-31 43037 bp Feature: domain Description: Zn_ribbon_recom Location: 3143079-3143265 bp Feature: domain Description: Zn_ribbon_recom Location: 31 43079-31 43265 bp Feature: gene Location: 3143936-3144265 bp Ori: AWL93329.1 Feature: domain Description: PHA00617 Location: 3144062-3144248 bp Feature: domain Description: PHA0061 7 Location: 31 44062-31 44248 bp Feature: gene Location: 3144373-3145041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3144376-3144607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 44376-31 44607 bp Feature: domain Description: GIIM Note: maturase Location: 3144661-3144871 bp Feature: domain Description: GIIM Note: maturase Location: 31 44661 -31 44871 bp Feature: gene Location: 3145394-3146740 bp Ori: AWL93330.1 Feature: domain Description: DUF772 Location: 3145553-3145769 bp Feature: domain Description: DUF772 Location: 31 45553-31 45769 bp Feature: domain Description: DDE_Tnp_1 Location: 3146222-3146441 bp Feature: domain Description: DDE_Tnp_1 Location: 31 46222-31 46441 bp Feature: domain Description: DDE_Tnp_1 Location: 3146513-3146630 bp Feature: domain Description: DDE_Tnp_1 Location: 31 4651 3-31 46630 bp Feature: gene Location: 3146978-3147256 bp Ori: AWL93331.1 Feature: domain Description: HU_IHF Location: 3146993-3147242 bp Feature: domain Description: HU_IHF Location: 31 46993-31 47242 bp Feature: gene Location: 3236671-3236835 bp Ori: AWL98092.1 Feature: domain Description: MmsB Location: 3236683-3236794 bp Feature: domain Description: MmsB Location: 3236683-3236794 bp Feature: gene Location: 3236836-3237165 bp Feature: gene Location: 3237172-3238650 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237580-3237658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237580-3237658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237910-3238273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323791 0-3238273 bp Feature: gene Location: 3238749-3239204 bp Ori: AWL93407.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3238785-3238959 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 3238785-3238959 bp Feature: gene Location: 3239377-3239781 bp Feature: gene Location: 3245461-3246129 bp Ori: AWL93414.1 Feature: domain Description: PHA02518 Location: 3245470-3246067 bp Feature: domain Description: PHA0251 8 Location: 3245470-3246067 bp Feature: gene Location: 3246573-3247409 bp Ori: AWL98093.1 Feature: domain Description: LomR Location: 3246609-3247320 bp Feature: domain Description: LomR Location: 3246609-3247320 bp Feature: gene Location: 3247342-3248673 bp Ori: AWL93415.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247636-3248299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247636-3248299 bp Feature: domain Description: GIIM Note: maturase Location: 3248365-3248587 bp Feature: domain Description: GIIM Note: maturase Location: 3248365-3248587 bp Feature: gene Location: 3248822-3249611 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3248825-3249251 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3248825-3249251 bp Feature: gene Location: 3249619-3250221 bp Feature: domain Description: INT_RitC_C_like Location: 3249661-3250216 bp Feature: domain Description: INT_RitC_C_like Location: 3249661 -325021 6 bp Feature: gene Location: 6025025-6026023 bp Ori: AWL95730.1 Gene: thiL Feature: domain Description: thiL Location: 6025055-6026021 bp Feature: domain Description: thiL Location: 6025055-6026021 bp Feature: gene Location: 6026258-6028378 bp Ori: AWL95731.1 Gene: hppA Feature: domain Description: OVP1 Location: 6026264-6028376 bp Feature: domain Description: OVP1 Location: 6026264-6028376 bp Feature: gene Location: 6028843-6029571 bp Ori: AWL95732.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6029179-6029569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60291 79-6029569 bp Feature: gene Location: 6029669-6029998 bp Ori: AWL95733.1 Feature: domain Description: PHA00617 Location: 6029795-6029981 bp Feature: domain Description: PHA0061 7 Location: 6029795-6029981 bp Feature: gene Location: 6030139-6031797 bp Feature: domain Description: Resolvase Location: 6030151-6030592 bp Feature: domain Description: Resolvase Location: 60301 51 -6030592 bp Feature: domain Description: Recombinase Location: 6030679-6031039 bp Feature: domain Description: Recombinase Location: 6030679-6031 039 bp Feature: domain Description: Zn_ribbon_recom Location: 6031081-6031267 bp Feature: domain Description: Zn_ribbon_recom Location: 6031 081 -6031 267 bp Feature: gene Location: 6031796-6032464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6031799-6032030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6031 799-6032030 bp Feature: domain Description: GIIM Note: maturase Location: 6032084-6032294 bp Feature: domain Description: GIIM Note: maturase Location: 6032084-6032294 bp Feature: gene Location: 6032656-6033654 bp Ori: AWL95734.1 Feature: domain Description: PBP2_Bug_TTT Location: 6032755-6033628 bp Feature: domain Description: PBP2_Bug_TTT Location: 6032755-6033628 bp Feature: gene Location: 6033874-6034428 bp Ori: AWL98330.1 Feature: domain Description: BamE Location: 6034021-6034408 bp Feature: domain Description: BamE Location: 6034021 -6034408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), HTH_Tnp_1 (pfam01527), RVT-GII, CpaD (COG5461), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), IS285 (COG3328), IstB_IS21_ATP (pfam08483)
IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-Retrons, DUF4263 (pfam14082), YjgF_YER057c_UK114_like_2 (cd06150), TPR_12 (pfam13424), YafK (COG3034), GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609)
HU_IHF (cl00257), MmsB (COG2084), DDE_Tnp_1_4 (pfam13701), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), DDE_Tnp_IS66 (pfam03050), INT_RitC_C_like (cd01182), thiL (TIGR01379), OVP1 (COG3808), PBP2_Bug_TTT (cd07012)
BamE (COG2913)