myRT

myRT report for GCA_002285755.1_ASM228575v1

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Seq: CP021288.1 Escherichia coli strain PA45B chromosome, complete genome (5074754 bp)
Overview 1 RT 1: 4710407-4715726 bp Neighborhood of RT #1 [4710407, 4715752] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 4710407-4711636 bp Ori: ASW62468.1 Gene: ypdA_1 Feature: domain Description: YesM Location: 4710887-4711628 bp Feature: domain Description: YesM Location: 471 0887-471 1 628 bp Feature: gene Location: 4711709-4711897 bp Feature: gene Location: 4712219-4712701 bp Ori: ASW62470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4712228-4712468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 2228-471 2468 bp Feature: domain Description: GIIM Note: maturase Location: 4712516-4712696 bp Feature: domain Description: GIIM Note: maturase Location: 471 251 6-471 2696 bp Feature: gene Location: 4712768-4713307 bp Ori: ASW62471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4713098-4713176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 3098-471 31 76 bp Feature: gene Location: 4713793-4714698 bp Feature: gene Location: 4714835-4715752 bp Ori: ASW62473.1 Gene: ybiY_2 Feature: domain Description: PFLE_PFLC Location: 4714871-4715726 bp Feature: domain Description: PFLE_PFLC Location: 471 4871 -471 5726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CP021289.1 Escherichia coli strain PA45B plasmid pPA45B, complete sequence (147172 bp)
Overview 1 RT 1: 12360-16362 bp 2 RT 2: 119201-123601 bp 3 RT 3: 135912-140090 bp Neighborhood of RT #1 [12360, 16415] InsE RVT-GII GIIM PHA02517 autotrans_barl Neighborhood of RT #2 [119201, 124335] PRK09413 PHA02517 RVT-GII GIIM rve Neighborhood of RT #3 [135912, 140095] InsE RVT-GII GIIM Tra5 InsE Feature: gene Location: 12360-12686 bp Ori: ASW62835.1 Feature: domain Description: InsE Location: 12363-12684 bp Feature: domain Description: InsE Location: 12 363-12 684 bp Feature: gene Location: 13092-13463 bp Feature: gene Location: 13757-15280 bp Ori: ASW62837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14030-14762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14030-14762 bp Feature: domain Description: GIIM Note: maturase Location: 14837-15035 bp Feature: domain Description: GIIM Note: maturase Location: 14837-15035 bp Feature: gene Location: 15397-15843 bp Ori: ASW62838.1 Gene: insF-1_1 Feature: domain Description: PHA02517 Location: 15400-15841 bp Feature: domain Description: PHA02 517 Location: 15400-15841 bp Feature: gene Location: 15846-16415 bp Ori: ASW62839.1 Gene: ycgV Feature: domain Description: autotrans_barl Location: 15927-16362 bp Feature: domain Description: autotrans_barl Location: 1592 7-16362 bp Feature: gene Location: 119201-119566 bp Ori: ASW62961.1 Gene: insC-1_2 Feature: domain Description: PRK09413 Location: 119204-119564 bp Feature: domain Description: PRK09413 Location: 1192 04-119564 bp Feature: gene Location: 119656-120102 bp Ori: ASW62962.1 Gene: insF-1_2 Feature: domain Description: PHA02517 Location: 119659-120100 bp Feature: domain Description: PHA02 517 Location: 119659-12 0100 bp Feature: gene Location: 120219-121742 bp Ori: ASW62963.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120492-121224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0492 -12 12 2 4 bp Feature: domain Description: GIIM Note: maturase Location: 121302-121497 bp Feature: domain Description: GIIM Note: maturase Location: 12 1302 -12 1497 bp Feature: gene Location: 122036-122407 bp Feature: gene Location: 122836-124335 bp Ori: ASW62965.1 Feature: domain Description: rve Location: 123208-123601 bp Feature: domain Description: rve Location: 12 32 08-12 3601 bp Feature: gene Location: 135912-136238 bp Ori: ASW62978.1 Feature: domain Description: InsE Location: 135915-136236 bp Feature: domain Description: InsE Location: 135915-1362 36 bp Feature: gene Location: 136644-137015 bp Feature: gene Location: 137309-138832 bp Ori: ASW62980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137582-138314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137582 -138314 bp Feature: domain Description: GIIM Note: maturase Location: 138392-138587 bp Feature: domain Description: GIIM Note: maturase Location: 138392 -138587 bp Feature: gene Location: 139152-139799 bp Ori: ASW62981.1 Gene: insEF-1_2 Feature: domain Description: Tra5 Location: 139263-139773 bp Feature: domain Description: Tra5 Location: 1392 63-139773 bp Feature: gene Location: 139796-140095 bp Ori: ASW62982.1 Gene: insE-1_2 Feature: domain Description: InsE Location: 139823-140090 bp Feature: domain Description: InsE Location: 13982 3-140090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), autotrans_barl (TIGR01414), PRK09413 (IS2 repressor TnpA; Reviewed), rve (pfam00665), Tra5 (COG2801)