myRT

myRT report for GCA_002285795.1_ASM228579v1

Download annotations/find similar RTs

Seq: CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome (6689726 bp)
Overview 1 RT 1: 1908007-1913872 bp 2 RT 2: 4378836-4384626 bp 3 RT 3: 5931515-5936711 bp Neighborhood of RT #1 [1908007, 1913991] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_1_4 RVT-GII GIIM HTH_28 HTH_33 DDE_3 Neighborhood of RT #2 [4378836, 4384626] Acetyltransf_10 DDE_3 RVT-GII GIIM DDE_Tnp_1_4 Neighborhood of RT #3 [5931515, 5936743] DUF4097 HTH_ARSR RVT-GII GIIM DUF4096 COG3293 Feature: gene Location: 1908007-1908861 bp Ori: ASW57535.1 Feature: domain Description: zf-IS66 Location: 1908157-1908289 bp Feature: domain Description: zf-IS66 Location: 1 9081 57-1 908289 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1908337-1908832 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 908337-1 908832 bp Feature: gene Location: 1909159-1910523 bp Ori: ASW54244.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1909171-1910515 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 9091 71 -1 91 051 5 bp Feature: gene Location: 1911243-1912454 bp Ori: ASW57536.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911414-1912068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 1 41 4-1 91 2068 bp Feature: domain Description: GIIM Note: maturase Location: 1912152-1912368 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 21 52-1 91 2368 bp Feature: gene Location: 1912973-1913407 bp Ori: ASW57537.1 Feature: domain Description: HTH_28 Location: 1912979-1913123 bp Feature: domain Description: HTH_28 Location: 1 91 2979-1 91 31 23 bp Feature: domain Description: HTH_33 Location: 1913213-1913387 bp Feature: domain Description: HTH_33 Location: 1 91 321 3-1 91 3387 bp Feature: gene Location: 1913428-1913991 bp Ori: ASW57538.1 Feature: domain Description: DDE_3 Location: 1913431-1913872 bp Feature: domain Description: DDE_3 Location: 1 91 3431 -1 91 3872 bp Feature: gene Location: 4378836-4379246 bp Ori: ASW55781.1 Feature: domain Description: Acetyltransf_10 Location: 4378923-4379226 bp Feature: domain Description: Acetyltransf_1 0 Location: 4378923-4379226 bp Feature: gene Location: 4379278-4379856 bp Ori: ASW55782.1 Feature: domain Description: DDE_3 Location: 4379284-4379698 bp Feature: domain Description: DDE_3 Location: 4379284-4379698 bp Feature: gene Location: 4380167-4381378 bp Ori: ASW57822.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380338-4380992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380338-4380992 bp Feature: domain Description: GIIM Note: maturase Location: 4381076-4381292 bp Feature: domain Description: GIIM Note: maturase Location: 4381 076-4381 292 bp Feature: gene Location: 4382074-4383488 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4382092-4383211 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 4382092-438321 1 bp Feature: gene Location: 4384012-4384626 bp Feature: gene Location: 5931515-5932249 bp Ori: ASW56812.1 Feature: domain Description: DUF4097 Location: 5931602-5932238 bp Feature: domain Description: DUF4097 Location: 5931 602-5932238 bp Feature: gene Location: 5932407-5933588 bp Ori: ASW56813.1 Feature: domain Description: HTH_ARSR Location: 5933205-5933382 bp Feature: domain Description: HTH_ARSR Location: 5933205-5933382 bp Feature: gene Location: 5933563-5934774 bp Ori: ASW58012.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5933734-5934388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5933734-5934388 bp Feature: domain Description: GIIM Note: maturase Location: 5934472-5934688 bp Feature: domain Description: GIIM Note: maturase Location: 5934472-5934688 bp Feature: gene Location: 5935302-5935778 bp Feature: gene Location: 5935943-5936743 bp Feature: domain Description: DUF4096 Location: 5935961-5936123 bp Feature: domain Description: DUF4096 Location: 5935961 -59361 23 bp Feature: domain Description: COG3293 Location: 5936585-5936711 bp Feature: domain Description: COG3293 Location: 5936585-593671 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518), HTH_33 (pfam13592), DDE_3 (pfam13358), Acetyltransf_10 (pfam13673), DUF4097 (pfam13349)
HTH_ARSR (smart00418), DUF4096 (pfam13340), COG3293 (Transposase )