myRT

myRT report for GCA_002287545.1_ASM228754v1

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Seq: CP023054.1 Vibrio anguillarum strain VIB43 chromosome 1, complete sequence (3239943 bp)
Overview 1 RT 1: 718719-725632 bp 2 RT 2: 1476799-1483473 bp 3 RT 3: 2932658-2938546 bp Neighborhood of RT #1 [718719, 725643] toxin_TenpN RVT-Retrons recD_rel Neighborhood of RT #2 [1476799, 1483493] xerC INT_tnpB_C_Tn554 RVT_N RVT-GII GIIM PHA01082 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #3 [2932658, 2938548] YegP RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 718719-719198 bp Ori: ASW80231.1 Feature: domain Description: toxin_TenpN Location: 718722-719112 bp Feature: domain Description: toxin_TenpN Location: 71 8722-71 91 1 2 bp Feature: gene Location: 720213-721028 bp Feature: gene Location: 721012-722025 bp Ori: ASW80233.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 721114-721690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 721 1 1 4-721 690 bp Feature: gene Location: 722027-723031 bp Feature: gene Location: 723478-725643 bp Ori: ASW80235.1 Feature: domain Description: recD_rel Location: 723757-725632 bp Feature: domain Description: recD_rel Location: 723757-725632 bp Feature: gene Location: 1476799-1478601 bp Ori: ASW80853.1 Feature: domain Description: xerC Location: 1476958-1477195 bp Feature: domain Description: xerC Location: 1 476958-1 4771 95 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 1477567-1478095 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 1 477567-1 478095 bp Feature: gene Location: 1478594-1479001 bp Feature: gene Location: 1479272-1480744 bp Ori: ASW80855.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1479320-1479563 bp Feature: domain Description: RVT_N Location: 1 479320-1 479563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479608-1480235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 479608-1 480235 bp Feature: domain Description: GIIM Note: maturase Location: 1480292-1480520 bp Feature: domain Description: GIIM Note: maturase Location: 1 480292-1 480520 bp Feature: gene Location: 1481499-1481870 bp Ori: ASW80856.1 Feature: domain Description: PHA01082 Location: 1481502-1481862 bp Feature: domain Description: PHA01 082 Location: 1 481 502-1 481 862 bp Feature: gene Location: 1481961-1483493 bp Ori: ASW80857.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1482075-1482276 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 482075-1 482276 bp Feature: domain Description: zf-IS66 Location: 1482303-1482435 bp Feature: domain Description: zf-IS66 Location: 1 482303-1 482435 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1482495-1483344 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 482495-1 483344 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1483365-1483473 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 483365-1 483473 bp Feature: gene Location: 2932658-2933215 bp Feature: gene Location: 2933520-2933672 bp Ori: ASW82094.1 Feature: domain Description: YegP Location: 2933523-2933640 bp Feature: domain Description: YegP Location: 2933523-2933640 bp Feature: gene Location: 2933779-2935431 bp Ori: ASW82095.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2933824-2934064 bp Feature: domain Description: RVT_N Location: 2933824-2934064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2934112-2934757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29341 1 2-2934757 bp Feature: domain Description: GIIM Note: maturase Location: 2934808-2935042 bp Feature: domain Description: GIIM Note: maturase Location: 2934808-2935042 bp Feature: domain Description: HNHc Note: nucleases Location: 2935258-2935420 bp Feature: domain Description: HNHc Note: nucleases Location: 2935258-2935420 bp Feature: gene Location: 2936554-2938188 bp Ori: ASW82096.1 Gene: groL Feature: domain Description: groEL Location: 2936560-2938177 bp Feature: domain Description: groEL Location: 2936560-29381 77 bp Feature: gene Location: 2938258-2938548 bp Ori: ASW82097.1 Gene: groES Feature: domain Description: groES Location: 2938261-2938546 bp Feature: domain Description: groES Location: 2938261 -2938546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT toxin_TenpN (cd17493), RVT-Retrons, recD_rel (TIGR01448), xerC (PRK01287), INT_tnpB_C_Tn554 (cd01187), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA01082 (putative transcription regulator), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), YegP (COG3422), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: CP023055.1 Vibrio anguillarum strain VIB43 chromosome 2, complete sequence (1152744 bp)
Overview 1 RT 1: 290175-295958 bp 2 RT 2: 765755-771698 bp Neighborhood of RT #1 [290175, 295969] PRK12440 RVT_N RVT-GII GIIM PRK10216 PRK10473 Neighborhood of RT #2 [765755, 771760] PRK10070 PRK10952 RVT_N RVT-GII GIIM proX MarR Feature: gene Location: 290175-291368 bp Ori: ASW82652.1 Feature: domain Description: PRK12440 Location: 290178-291366 bp Feature: domain Description: PRK12 440 Location: 2 90178-2 91366 bp Feature: gene Location: 291543-291740 bp Feature: gene Location: 291656-293128 bp Ori: ASW82653.1 Gene: ltrA Feature: domain Description: RVT_N Location: 291704-291947 bp Feature: domain Description: RVT_N Location: 2 91704-2 91947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291992-292619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 91992 -2 92 619 bp Feature: domain Description: GIIM Note: maturase Location: 292682-292904 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 682 -2 92 904 bp Feature: gene Location: 293830-294786 bp Ori: ASW82654.1 Feature: domain Description: PRK10216 Location: 293833-294778 bp Feature: domain Description: PRK102 16 Location: 2 93833-2 94778 bp Feature: gene Location: 294761-295969 bp Ori: ASW83382.1 Feature: domain Description: PRK10473 Location: 294785-295958 bp Feature: domain Description: PRK10473 Location: 2 94785-2 95958 bp Feature: gene Location: 765755-766942 bp Ori: ASW83084.1 Feature: domain Description: PRK10070 Location: 765767-766940 bp Feature: domain Description: PRK10070 Location: 765767-766940 bp Feature: gene Location: 766945-768048 bp Ori: ASW83085.1 Feature: domain Description: PRK10952 Location: 766978-767986 bp Feature: domain Description: PRK10952 Location: 766978-767986 bp Feature: gene Location: 768151-769623 bp Ori: ASW83086.1 Gene: ltrA Feature: domain Description: RVT_N Location: 768199-768442 bp Feature: domain Description: RVT_N Location: 768199-768442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768487-769114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768487-769114 bp Feature: domain Description: GIIM Note: maturase Location: 769171-769399 bp Feature: domain Description: GIIM Note: maturase Location: 769171-769399 bp Feature: gene Location: 770216-771223 bp Ori: ASW83408.1 Feature: domain Description: proX Location: 770249-771221 bp Feature: domain Description: proX Location: 7702 49-7712 2 1 bp Feature: gene Location: 771230-771760 bp Ori: ASW83087.1 Feature: domain Description: MarR Location: 771314-771698 bp Feature: domain Description: MarR Location: 771314-771698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12440 (acetate/propionate family kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10070 (proline/glycine betaine ABC transporter ATP-binding protein ProV), PRK10952 (proline/glycine betaine ABC transporter permease ProW), proX (PRK11119), MarR (pfam01047)