myRT

myRT report for GCA_002287725.2_ASM228772v2

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Seq: CP023316.1 Pseudomonas aeruginosa strain PPF-1 chromosome, complete genome (6930893 bp)
Overview 1 RT 1: 687287-696432 bp 2 RT 2: 712691-720884 bp 3 RT 3: 1134805-1141615 bp 4 RT 4: 2947950-2953872 bp 5 RT 5: 5603431-5610879 bp Neighborhood of RT #1 [687287, 696434] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [712691, 720898] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1134805, 1141812] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [2947950, 2953872] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #5 [5603431, 5610884] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0390 SF2_C_SNF umuC Feature: gene Location: 687287-687364 bp Feature: gene Location: 687350-687667 bp Ori: AVZ37899.1 Feature: domain Description: HipA_So_like Location: 687389-687629 bp Feature: domain Description: HipA_So_like Location: 687389-687629 bp Feature: gene Location: 687971-689656 bp Ori: AVZ32354.1 Gene: ltrA Feature: domain Description: RVT_N Location: 688028-688268 bp Feature: domain Description: RVT_N Location: 688028-688268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688316-688952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68831 6-688952 bp Feature: domain Description: GIIM Note: maturase Location: 689006-689237 bp Feature: domain Description: GIIM Note: maturase Location: 689006-689237 bp Feature: domain Description: HNH Note: nucleases Location: 689489-689627 bp Feature: domain Description: HNH Note: nucleases Location: 689489-689627 bp Feature: gene Location: 690737-694474 bp Ori: AVZ32355.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 690845-691502 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 690845-691 502 bp Feature: domain Description: PRK09776 Location: 691715-692186 bp Feature: domain Description: PRK09776 Location: 691 71 5-6921 86 bp Feature: domain Description: PAS Location: 692231-692768 bp Feature: domain Description: PAS Location: 692231 -692768 bp Feature: domain Description: PRK10060 Location: 692777-694424 bp Feature: domain Description: PRK1 0060 Location: 692777-694424 bp Feature: gene Location: 694581-696434 bp Ori: AVZ32356.1 Feature: domain Description: PRK05658 Location: 694593-696432 bp Feature: domain Description: PRK05658 Location: 694593-696432 bp Feature: gene Location: 712691-713983 bp Ori: AVZ32374.1 Feature: domain Description: PRK10770 Location: 712781-713975 bp Feature: domain Description: PRK1 0770 Location: 71 2781 -71 3975 bp Feature: gene Location: 713964-716765 bp Ori: AVZ32375.1 Feature: domain Description: LptD Location: 714159-716751 bp Feature: domain Description: LptD Location: 71 41 59-71 6751 bp Feature: gene Location: 716898-718610 bp Ori: AVZ32376.1 Gene: ltrA Feature: domain Description: RVT_N Location: 716955-717198 bp Feature: domain Description: RVT_N Location: 71 6955-71 71 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717243-717879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 7243-71 7879 bp Feature: domain Description: YkfC Location: 718089-718239 bp Feature: domain Description: YkfC Location: 71 8089-71 8239 bp Feature: domain Description: HNH Note: nucleases Location: 718416-718554 bp Feature: domain Description: HNH Note: nucleases Location: 71 841 6-71 8554 bp Feature: gene Location: 718797-719009 bp Feature: gene Location: 719882-720898 bp Ori: AVZ32378.1 Feature: domain Description: COG3178 Location: 719885-720884 bp Feature: domain Description: COG31 78 Location: 71 9885-720884 bp Feature: gene Location: 1134805-1135632 bp Ori: AVZ32750.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 1134835-1135549 bp Feature: domain Description: ABC_phnC Location: 1 1 34835-1 1 35549 bp Feature: gene Location: 1135975-1136485 bp Feature: domain Description: DUF772 Location: 1136125-1136320 bp Feature: domain Description: DUF772 Location: 1 1 361 25-1 1 36320 bp Feature: gene Location: 1137005-1138273 bp Ori: AVZ32751.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137218-1137875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3721 8-1 1 37875 bp Feature: domain Description: GIIM Note: maturase Location: 1137953-1138175 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 37953-1 1 381 75 bp Feature: gene Location: 1138423-1138749 bp Feature: gene Location: 1140268-1141812 bp Ori: AVZ32752.1 Feature: domain Description: CHD Location: 1140484-1140898 bp Feature: domain Description: CHD Location: 1 1 40484-1 1 40898 bp Feature: domain Description: CHD Location: 1141126-1141615 bp Feature: domain Description: CHD Location: 1 1 41 1 26-1 1 41 61 5 bp Feature: gene Location: 2947950-2948672 bp Ori: AVZ34390.1 Gene: arsH Feature: domain Description: resist_ArsH Location: 2947974-2948628 bp Feature: domain Description: resist_ArsH Location: 2947974-2948628 bp Feature: gene Location: 2948731-2949975 bp Feature: domain Description: KOG0389 Location: 2948749-2948866 bp Feature: domain Description: KOG0389 Location: 2948749-2948866 bp Feature: domain Description: SF2_C_SNF Location: 2949424-2949811 bp Feature: domain Description: SF2_C_SNF Location: 2949424-294981 1 bp Feature: gene Location: 2950058-2951776 bp Ori: AVZ34391.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2950115-2950352 bp Feature: domain Description: RVT_N Location: 29501 1 5-2950352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950403-2951054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950403-2951 054 bp Feature: domain Description: GIIM Note: maturase Location: 2951108-2951339 bp Feature: domain Description: GIIM Note: maturase Location: 2951 1 08-2951 339 bp Feature: domain Description: HNHc Note: nucleases Location: 2951573-2951729 bp Feature: domain Description: HNHc Note: nucleases Location: 2951 573-2951 729 bp Feature: gene Location: 2952394-2953428 bp Feature: domain Description: DEXHc_Snf Location: 2952613-2952871 bp Feature: domain Description: DEXHc_Snf Location: 295261 3-2952871 bp Feature: gene Location: 2953565-2953872 bp Feature: gene Location: 5603431-5604876 bp Ori: AVZ36720.1 Feature: domain Description: AdoMet_MTases Location: 5603554-5603920 bp Feature: domain Description: AdoMet_MTases Location: 5603554-5603920 bp Feature: gene Location: 5604981-5605985 bp Feature: domain Description: DEXHc_Snf Location: 5605173-5605419 bp Feature: domain Description: DEXHc_Snf Location: 56051 73-560541 9 bp Feature: gene Location: 5606603-5608321 bp Ori: AVZ36721.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5606660-5606897 bp Feature: domain Description: RVT_N Location: 5606660-5606897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5606948-5607599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5606948-5607599 bp Feature: domain Description: GIIM Note: maturase Location: 5607653-5607884 bp Feature: domain Description: GIIM Note: maturase Location: 5607653-5607884 bp Feature: domain Description: HNHc Note: nucleases Location: 5608118-5608274 bp Feature: domain Description: HNHc Note: nucleases Location: 56081 1 8-5608274 bp Feature: gene Location: 5608404-5609648 bp Feature: domain Description: KOG0390 Location: 5608425-5608545 bp Feature: domain Description: KOG0390 Location: 5608425-5608545 bp Feature: domain Description: SF2_C_SNF Location: 5609106-5609484 bp Feature: domain Description: SF2_C_SNF Location: 56091 06-5609484 bp Feature: gene Location: 5609703-5610884 bp Ori: AVZ36722.1 Feature: domain Description: umuC Location: 5609724-5610879 bp Feature: domain Description: umuC Location: 5609724-561 0879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793)
HNHc (smart00507), DEXHc_Snf (cd17919), AdoMet_MTases (cl17173), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), umuC (PRK03609)