myRT

myRT report for GCA_002288285.1_ASM228828v1

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Seq: CP022749.1 Sphingobium sp. C1 plasmid p3, complete sequence (171560 bp)
Overview 1 RT 1: 57636-63573 bp Neighborhood of RT #1 [57636, 63573] COG3293 COG3293 RVT-GII Intron_maturas2 Feature: gene Location: 57636-58175 bp Feature: gene Location: 58260-59081 bp Ori: ASY46949.1 Feature: domain Description: COG3293 Location: 58314-58665 bp Feature: domain Description: COG3293 Location: 5831 4-58665 bp Feature: domain Description: COG3293 Location: 58683-59064 bp Feature: domain Description: COG3293 Location: 58683-59064 bp Feature: gene Location: 59220-60911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59487-60318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59487-6031 8 bp Feature: domain Description: Intron_maturas2 Location: 60459-60717 bp Feature: domain Description: Intron_maturas2 Location: 60459-6071 7 bp Feature: gene Location: 61561-61881 bp Feature: gene Location: 62407-63573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CP022745.1 Sphingobium sp. C1 chromosome I, complete sequence (3058963 bp)
Overview 1 RT 1: 533315-540119 bp Neighborhood of RT #1 [533315, 540119] PRK09182 ALP_N-acyl_transferase group_II_RT_mat RVT-UG6 DnaG Feature: gene Location: 533315-534247 bp Ori: ASY43472.1 Feature: domain Description: PRK09182 Location: 533381-534236 bp Feature: domain Description: PRK09182 Location: 533381-5342 36 bp Feature: gene Location: 534244-535152 bp Ori: ASY43473.1 Feature: domain Description: ALP_N-acyl_transferase Location: 534286-534595 bp Feature: domain Description: ALP_N-acyl_transferase Location: 5342 86-534595 bp Feature: gene Location: 535149-538313 bp Ori: ASY43474.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 535182-535518 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 535182 -535518 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 535785-536220 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 535785-5362 2 0 bp Feature: gene Location: 538315-539349 bp Ori: ASY43475.1 Feature: domain Description: DnaG Location: 538417-539272 bp Feature: domain Description: DnaG Location: 538417-5392 72 bp Feature: gene Location: 539439-540119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09182 (DNA polymerase III subunit epsilon; Validated), ALP_N-acyl_transferase (cd07571), group_II_RT_mat (TIGR04416), RVT-UG6, DnaG (COG0358)

Seq: CP022750.1 Sphingobium sp. C1 plasmid p4, complete sequence (79937 bp)
Overview 1 RT 1: 45293-47334 bp Neighborhood of RT #1 [45293, 47334] HTH_XRE RVT-Retrons Feature: gene Location: 45293-45496 bp Feature: gene Location: 45532-45837 bp Ori: ASY47099.1 Feature: domain Description: HTH_XRE Location: 45541-45706 bp Feature: domain Description: HTH_XRE Location: 45541-45706 bp Feature: gene Location: 45827-46699 bp Ori: ASY47100.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45974-46505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45974-46505 bp Feature: gene Location: 46721-46978 bp Feature: gene Location: 47053-47334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons