myRT

myRT report for GCA_002288485.1_ASM228848v1

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Seq: CP023072.1 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence (742947 bp)
Overview 1 RT 1: 179434-183782 bp 2 RT 2: 330213-335591 bp 3 RT 3: 547512-550558 bp 4 RT 4: 554122-560418 bp 5 RT 5: 720419-724449 bp Neighborhood of RT #1 [179434, 183817] groES groEL RVT-GII Nudix_Hydrolase_9 NodN Neighborhood of RT #2 [330213, 335591] PRK06526 RVT-GII GIIM COG4976 Neighborhood of RT #3 [547512, 550596] RVT-GII TnpB_IS66 Neighborhood of RT #4 [554122, 560418] DDE_Tnp_IS66_C RVT-GII DDE_5 Neighborhood of RT #5 [720419, 724449] PRK13825 TraH_2 RVT-GII RVT-GII RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 179434-179730 bp Ori: ASY73764.1 Feature: domain Description: groES Location: 179449-179725 bp Feature: domain Description: groES Location: 1 79449-1 79725 bp Feature: gene Location: 179806-181443 bp Ori: ASY73765.1 Feature: domain Description: groEL Location: 179809-181435 bp Feature: domain Description: groEL Location: 1 79809-1 81 435 bp Feature: gene Location: 181743-181856 bp Ori: ASY73766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181746-181842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 746-1 81 842 bp Feature: gene Location: 181919-182071 bp Ori: ASY73767.1 Feature: domain Description: Nudix_Hydrolase_9 Location: 181925-182030 bp Feature: domain Description: Nudix_Hydrolase_9 Location: 1 81 925-1 82030 bp Feature: gene Location: 183329-183817 bp Ori: ASY73768.1 Feature: domain Description: NodN Location: 183347-183782 bp Feature: domain Description: NodN Location: 1 83347-1 83782 bp Feature: gene Location: 330213-330611 bp Feature: gene Location: 330611-331411 bp Ori: ASY73914.1 Feature: domain Description: PRK06526 Location: 330656-331346 bp Feature: domain Description: PRK06526 Location: 330656-331 346 bp Feature: gene Location: 331572-332810 bp Ori: ASY73915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331764-332382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 764-332382 bp Feature: domain Description: GIIM Note: maturase Location: 332430-332658 bp Feature: domain Description: GIIM Note: maturase Location: 332430-332658 bp Feature: gene Location: 333938-334636 bp Ori: ASY73916.1 Feature: domain Description: COG4976 Location: 334043-334463 bp Feature: domain Description: COG4976 Location: 334043-334463 bp Feature: gene Location: 335475-335591 bp Feature: gene Location: 547512-547679 bp Feature: gene Location: 547676-547831 bp Feature: gene Location: 547879-549702 bp Ori: ASY74116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548617-549307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54861 7-549307 bp Feature: gene Location: 550046-550228 bp Feature: gene Location: 550243-550596 bp Ori: ASY74118.1 Feature: domain Description: TnpB_IS66 Location: 550270-550558 bp Feature: domain Description: TnpB_IS66 Location: 550270-550558 bp Feature: gene Location: 554122-554301 bp Feature: gene Location: 554692-554829 bp Ori: ASY74122.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 554701-554800 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 554701 -554800 bp Feature: gene Location: 554934-556757 bp Ori: ASY74123.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555672-556362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555672-556362 bp Feature: gene Location: 558086-559381 bp Ori: ASY74124.1 Feature: domain Description: DDE_5 Location: 558131-558917 bp Feature: domain Description: DDE_5 Location: 5581 31 -55891 7 bp Feature: gene Location: 560239-560418 bp Feature: gene Location: 720419-721582 bp Ori: ASY74282.1 Feature: domain Description: PRK13825 Location: 720422-721580 bp Feature: domain Description: PRK1 3825 Location: 720422-721 580 bp Feature: gene Location: 721599-722198 bp Ori: ASY74283.1 Feature: domain Description: TraH_2 Location: 721602-722193 bp Feature: domain Description: TraH_2 Location: 721 602-7221 93 bp Feature: gene Location: 722694-723095 bp Ori: ASY74284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722991-723057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722991 -723057 bp Feature: gene Location: 723092-723295 bp Ori: ASY74285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723110-723266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7231 1 0-723266 bp Feature: gene Location: 723292-723759 bp Ori: ASY74286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723298-723382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723298-723382 bp Feature: domain Description: GIIM Note: maturase Location: 723451-723664 bp Feature: domain Description: GIIM Note: maturase Location: 723451 -723664 bp Feature: gene Location: 723976-724134 bp Ori: ASY74287.1 Feature: domain Description: DDE_Tnp_1_4 Location: 723991-724129 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 723991 -7241 29 bp Feature: gene Location: 724159-724449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT-GII, Nudix_Hydrolase_9 (cd04666), NodN (cd03450), PRK06526 (transposase; Provisional), GIIM (pfam08388), COG4976 (Predicted methyltransferase, contains TPR repeat ), TnpB_IS66 (pfam05717), DDE_Tnp_IS66_C (pfam13817)
DDE_5 (pfam13546), PRK13825 (conjugal transfer protein TraB; Provisional), TraH_2 (pfam06871), DDE_Tnp_1_4 (pfam13701)

Seq: CP023070.1 Sinorhizobium fredii CCBAU 83666 chromosome, complete genome (3986633 bp)
Overview 1 RT 1: 3339953-3347402 bp Neighborhood of RT #1 [3339953, 3347548] PLDc_unchar6 PLDc_unchar6 RVT-UG11 INT_C_like_1 Feature: gene Location: 3339953-3342328 bp Ori: ASY70763.1 Feature: domain Description: PLDc_unchar6 Location: 3340199-3340301 bp Feature: domain Description: PLDc_unchar6 Location: 3340199-3340301 bp Feature: domain Description: PLDc_unchar6 Location: 3340532-3340859 bp Feature: domain Description: PLDc_unchar6 Location: 3340532 -3340859 bp Feature: gene Location: 3342438-3343856 bp Feature: gene Location: 3344399-3345214 bp Ori: ASY70765.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3344537-3344972 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3344537-3344972 bp Feature: gene Location: 3345207-3345653 bp Feature: gene Location: 3345962-3347548 bp Ori: ASY70767.1 Feature: domain Description: INT_C_like_1 Location: 3346937-3347402 bp Feature: domain Description: INT_C_like_1 Location: 3346937-3347402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_unchar6 (cd09176), RVT-UG11, INT_C_like_1 (cd01184)