myRT

myRT report for GCA_002288505.1_ASM228850v1

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Seq: CP023063.1 Sinorhizobium sp. CCBAU 05631 chromosome, complete genome (4018433 bp)
Overview 1 RT 1: 2826870-2832430 bp Neighborhood of RT #1 [2826870, 2832465] COG3547 INT_RitA_C_like RVT-GII RVT-GII PBP2_NikA_DppA_OppA_like_3 Feature: gene Location: 2826870-2827904 bp Ori: ASY57871.1 Feature: domain Description: COG3547 Location: 2826888-2827857 bp Feature: domain Description: COG3547 Location: 2826888-2827857 bp Feature: gene Location: 2828394-2828651 bp Ori: ASY57872.1 Feature: domain Description: INT_RitA_C_like Location: 2828409-2828634 bp Feature: domain Description: INT_RitA_C_like Location: 2828409-2828634 bp Feature: gene Location: 2829065-2829397 bp Ori: ASY57873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829071-2829209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829071 -2829209 bp Feature: gene Location: 2829429-2829923 bp Ori: ASY57874.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829438-2829840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829438-2829840 bp Feature: gene Location: 2829999-2830202 bp Feature: gene Location: 2830945-2832465 bp Ori: ASY57876.1 Feature: domain Description: PBP2_NikA_DppA_OppA_like_3 Location: 2831023-2832430 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_3 Location: 2831 023-2832430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), INT_RitA_C_like (cd01188), RVT-GII, PBP2_NikA_DppA_OppA_like_3 (cd08490)

Seq: CP023065.1 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence (742373 bp)
Overview 1 RT 1: 153930-164266 bp 2 RT 2: 720200-723506 bp Neighborhood of RT #1 [153930, 164266] DDE_5 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 RVT-GII Neighborhood of RT #2 [720200, 723506] COG3293 TraH_2 RVT-GII RVT-GII RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 153930-154127 bp Feature: gene Location: 154978-156273 bp Ori: ASY60704.1 Feature: domain Description: DDE_5 Location: 155023-155809 bp Feature: domain Description: DDE_5 Location: 15502 3-155809 bp Feature: gene Location: 157603-159426 bp Ori: ASY60705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158341-159031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158341-159031 bp Feature: gene Location: 159531-160016 bp Ori: ASY60706.1 Feature: domain Description: DDE_Tnp_IS66 Location: 159585-159855 bp Feature: domain Description: DDE_Tnp_IS66 Location: 159585-159855 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 159876-159987 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 159876-159987 bp Feature: gene Location: 159979-161130 bp Ori: ASY60707.1 Feature: domain Description: LZ_Tnp_IS66 Location: 160096-160327 bp Feature: domain Description: LZ_Tnp_IS66 Location: 160096-16032 7 bp Feature: domain Description: zf-IS66 Location: 160354-160480 bp Feature: domain Description: zf-IS66 Location: 160354-160480 bp Feature: domain Description: DDE_Tnp_IS66 Location: 160543-161119 bp Feature: domain Description: DDE_Tnp_IS66 Location: 160543-161119 bp Feature: gene Location: 161183-161536 bp Ori: ASY60708.1 Feature: domain Description: TnpB_IS66 Location: 161210-161498 bp Feature: domain Description: TnpB_IS66 Location: 1612 10-161498 bp Feature: gene Location: 161551-161733 bp Feature: gene Location: 162077-163093 bp Ori: ASY60710.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162815-162962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 815-162 962 bp Feature: gene Location: 163947-164102 bp Feature: gene Location: 164099-164266 bp Feature: gene Location: 720200-720616 bp Ori: ASY61317.1 Feature: domain Description: COG3293 Location: 720230-720608 bp Feature: domain Description: COG32 93 Location: 72 02 30-72 0608 bp Feature: gene Location: 720746-721210 bp Ori: ASY61318.1 Feature: domain Description: TraH_2 Location: 720749-721205 bp Feature: domain Description: TraH_2 Location: 72 0749-72 12 05 bp Feature: gene Location: 721706-722107 bp Ori: ASY61319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722003-722069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 003-72 2 069 bp Feature: gene Location: 722104-722307 bp Ori: ASY61320.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722122-722278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 12 2 -72 2 2 78 bp Feature: gene Location: 722307-722771 bp Ori: ASY61321.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722310-722394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 310-72 2 394 bp Feature: domain Description: GIIM Note: maturase Location: 722463-722676 bp Feature: domain Description: GIIM Note: maturase Location: 72 2 463-72 2 676 bp Feature: gene Location: 722988-723146 bp Ori: ASY61322.1 Feature: domain Description: DDE_Tnp_1_4 Location: 723003-723141 bp Feature: domain Description: DDE_Tnp_1_4 Location: 72 3003-72 3141 bp Feature: gene Location: 723171-723506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), TnpB_IS66 (pfam05717), COG3293 (Transposase ), TraH_2 (pfam06871), GIIM (pfam08388)
DDE_Tnp_1_4 (pfam13701)