myRT

myRT report for GCA_002302315.1_ASM230231v1

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Seq: CP023347.1 Escherichia coli strain ETEC-2265 plasmid unnamed1, complete sequence (142368 bp)
Overview 1 RT 1: 22963-26604 bp 2 RT 2: 47058-54227 bp 3 RT 3: 127597-131240 bp Neighborhood of RT #1 [22963, 26729] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [47058, 54468] Peptidase_S6 autotrans_barl RVT-GII GIIM COG4644 Neighborhood of RT #3 [127597, 131240] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 22963-23082 bp Feature: gene Location: 23227-23387 bp Feature: gene Location: 24139-25806 bp Ori: ATB11694.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24187-24424 bp Feature: domain Description: RVT_N Location: 241 87-24424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24475-25117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24475-251 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 25168-25402 bp Feature: domain Description: GIIM Note: maturase Location: 251 68-25402 bp Feature: domain Description: HNHc Note: nucleases Location: 25612-25771 bp Feature: domain Description: HNHc Note: nucleases Location: 2561 2-25771 bp Feature: gene Location: 26119-26310 bp Feature: gene Location: 26307-26729 bp Ori: ATB11696.1 Feature: domain Description: DUF1380 Location: 26310-26604 bp Feature: domain Description: DUF1 380 Location: 2631 0-26604 bp Feature: gene Location: 47058-47159 bp Feature: gene Location: 47329-51423 bp Ori: ATB11720.1 Feature: domain Description: Peptidase_S6 Location: 47482-49666 bp Feature: domain Description: Peptidase_S6 Location: 47482-49666 bp Feature: domain Description: autotrans_barl Location: 50200-51421 bp Feature: domain Description: autotrans_barl Location: 50200-51 421 bp Feature: gene Location: 52222-53553 bp Ori: ATB11721.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52507-53194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52507-531 94 bp Feature: domain Description: GIIM Note: maturase Location: 53311-53479 bp Feature: domain Description: GIIM Note: maturase Location: 5331 1 -53479 bp Feature: gene Location: 53564-53836 bp Feature: gene Location: 54056-54468 bp Feature: domain Description: COG4644 Location: 54059-54227 bp Feature: domain Description: COG4644 Location: 54059-54227 bp Feature: gene Location: 127597-127857 bp Ori: ATB11792.1 Feature: domain Description: Ogr_Delta Location: 127606-127747 bp Feature: domain Description: Ogr_Delta Location: 1 27606-1 27747 bp Feature: gene Location: 127900-128298 bp Feature: domain Description: D Location: 127909-128272 bp Feature: domain Description: D Location: 1 27909-1 28272 bp Feature: gene Location: 128409-129740 bp Ori: ATB11793.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128694-129381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28694-1 29381 bp Feature: domain Description: GIIM Note: maturase Location: 129498-129666 bp Feature: domain Description: GIIM Note: maturase Location: 1 29498-1 29666 bp Feature: gene Location: 129751-130023 bp Feature: gene Location: 130551-131240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), COG4644 (Transposase and inactivated derivatives, TnpA family ), Ogr_Delta (pfam04606), D (PHA02561)

Seq: CP023346.1 Escherichia coli strain ETEC-2265 chromosome, complete genome (5088339 bp)
Overview 1 RT 1: 2209127-2213993 bp 2 RT 2: 5049525-5055941 bp Neighborhood of RT #1 [2209127, 2214402] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [5049525, 5055941] phage_tail_N ABC_SMC2_euk Collar Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 2209127-2210977 bp Ori: ATB08775.1 Feature: domain Description: LysM Location: 2209340-2209478 bp Feature: domain Description: LysM Location: 2 2 09340-2 2 09478 bp Feature: domain Description: IAT_beta Location: 2209559-2210384 bp Feature: domain Description: IAT_beta Location: 2 2 09559-2 2 10384 bp Feature: domain Description: PRK15318 Location: 2210585-2210708 bp Feature: domain Description: PRK15318 Location: 2 2 10585-2 2 10708 bp Feature: domain Description: Invasin_D3 Location: 2210723-2210960 bp Feature: domain Description: Invasin_D3 Location: 2 2 1072 3-2 2 10960 bp Feature: gene Location: 2210979-2211455 bp Feature: domain Description: PHA02517 Location: 2210982-2211447 bp Feature: domain Description: PHA02 517 Location: 2 2 10982 -2 2 11447 bp Feature: gene Location: 2211536-2213059 bp Ori: ATB08776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2211809-2212541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 11809-2 2 12 541 bp Feature: domain Description: GIIM Note: maturase Location: 2212616-2212814 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 12 616-2 2 12 814 bp Feature: gene Location: 2213353-2213724 bp Feature: gene Location: 2213717-2214402 bp Feature: domain Description: InsE Location: 2213729-2213993 bp Feature: domain Description: InsE Location: 2 2 1372 9-2 2 13993 bp Feature: gene Location: 5049525-5052923 bp Ori: ATB11429.1 Feature: domain Description: phage_tail_N Location: 5049528-5049927 bp Feature: domain Description: phage_tail_N Location: 504952 8-504992 7 bp Feature: domain Description: ABC_SMC2_euk Location: 5049927-5051019 bp Feature: domain Description: ABC_SMC2 _euk Location: 504992 7-5051019 bp Feature: domain Description: Collar Location: 5052246-5052384 bp Feature: domain Description: Collar Location: 5052 2 46-5052 384 bp Feature: gene Location: 5052923-5053507 bp Ori: ATB11430.1 Feature: domain Description: Caudo_TAP Location: 5053139-5053496 bp Feature: domain Description: Caudo_TAP Location: 5053139-5053496 bp Feature: gene Location: 5053620-5054990 bp Ori: ATB11431.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5053848-5054454 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5053848-5054454 bp Feature: gene Location: 5054968-5055519 bp Ori: ATB11432.1 Feature: domain Description: SLATT_5 Location: 5054977-5055490 bp Feature: domain Description: SLATT_5 Location: 5054977-5055490 bp Feature: gene Location: 5055764-5055941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), phage_tail_N (pfam08400), ABC_SMC2_euk (cd03273)
Collar (pfam07484), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)