myRT

myRT report for GCA_002310335.1_ASM231033v1

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Seq: CP023311.1 Vibrio anguillarum strain VIB12 chromosome 2, complete sequence (1282503 bp)
Overview 1 RT 1: 150856-159386 bp 2 RT 2: 164949-172610 bp 3 RT 3: 1121180-1126217 bp 4 RT 4: 1222815-1231285 bp Neighborhood of RT #1 [150856, 159386] LysR RVT_N RVT-GII GIIM RVT-GII GIIM InsE RVT_N RVT-GII HTH_Tnp_ISL3 DDE_Tnp_ISL3 Neighborhood of RT #2 [164949, 172618] PRK12440 InsA RVT_N RVT-GII GIIM PRK05367 PRK01202 Neighborhood of RT #3 [1121180, 1126217] HTH_23 RVT_N RVT-GII ComEC ComEC Neighborhood of RT #4 [1222815, 1231329] Cache_2 Tar YehS RVT_N RVT-GII GIIM HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 150856-151755 bp Ori: ATC59119.1 Feature: domain Description: LysR Location: 150859-151729 bp Feature: domain Description: LysR Location: 1 50859-1 51 729 bp Feature: gene Location: 151887-152084 bp Feature: gene Location: 152000-153472 bp Ori: ATC59120.1 Gene: ltrA Feature: domain Description: RVT_N Location: 152048-152291 bp Feature: domain Description: RVT_N Location: 1 52048-1 52291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152336-152963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52336-1 52963 bp Feature: domain Description: GIIM Note: maturase Location: 153026-153248 bp Feature: domain Description: GIIM Note: maturase Location: 1 53026-1 53248 bp Feature: gene Location: 153819-154017 bp Feature: gene Location: 153933-154883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153939-154374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 53939-1 54374 bp Feature: domain Description: GIIM Note: maturase Location: 154431-154659 bp Feature: domain Description: GIIM Note: maturase Location: 1 54431 -1 54659 bp Feature: gene Location: 155817-156075 bp Ori: ATC59121.1 Feature: domain Description: InsE Location: 155832-156075 bp Feature: domain Description: InsE Location: 1 55832-1 56075 bp Feature: gene Location: 154898-155817 bp Feature: gene Location: 156120-156782 bp Ori: ATC59991.1 Feature: domain Description: RVT_N Location: 156282-156525 bp Feature: domain Description: RVT_N Location: 1 56282-1 56525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156570-156753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56570-1 56753 bp Feature: gene Location: 157544-158713 bp Ori: ATC59122.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 157739-157886 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 57739-1 57886 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 157943-158654 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 57943-1 58654 bp Feature: gene Location: 159099-159386 bp Feature: gene Location: 164949-166142 bp Ori: ATC59128.1 Feature: domain Description: PRK12440 Location: 164952-166140 bp Feature: domain Description: PRK1 2440 Location: 1 64952-1 661 40 bp Feature: gene Location: 166584-167281 bp Feature: domain Description: InsA Location: 166587-166854 bp Feature: domain Description: InsA Location: 1 66587-1 66854 bp Feature: gene Location: 167562-169034 bp Ori: ATC59129.1 Gene: ltrA Feature: domain Description: RVT_N Location: 167610-167853 bp Feature: domain Description: RVT_N Location: 1 6761 0-1 67853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167898-168525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67898-1 68525 bp Feature: domain Description: GIIM Note: maturase Location: 168582-168810 bp Feature: domain Description: GIIM Note: maturase Location: 1 68582-1 6881 0 bp Feature: gene Location: 169277-172156 bp Ori: ATC59130.1 Gene: gcvP Feature: domain Description: PRK05367 Location: 169313-172151 bp Feature: domain Description: PRK05367 Location: 1 6931 3-1 721 51 bp Feature: gene Location: 172238-172618 bp Ori: ATC59131.1 Gene: gcvH Feature: domain Description: PRK01202 Location: 172247-172610 bp Feature: domain Description: PRK01 202 Location: 1 72247-1 7261 0 bp Feature: gene Location: 1121180-1122099 bp Feature: gene Location: 1122106-1122390 bp Feature: domain Description: HTH_23 Location: 1122190-1122307 bp Feature: domain Description: HTH_23 Location: 1 1 221 90-1 1 22307 bp Feature: gene Location: 1122428-1123333 bp Ori: ATC60045.1 Feature: domain Description: RVT_N Location: 1122476-1122719 bp Feature: domain Description: RVT_N Location: 1 1 22476-1 1 2271 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122764-1123325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 22764-1 1 23325 bp Feature: gene Location: 1124305-1125396 bp Ori: ATC59881.1 Feature: domain Description: ComEC Location: 1124425-1124629 bp Feature: domain Description: ComEC Location: 1 1 24425-1 1 24629 bp Feature: domain Description: ComEC Location: 1124941-1125304 bp Feature: domain Description: ComEC Location: 1 1 24941 -1 1 25304 bp Feature: gene Location: 1125561-1126217 bp Feature: gene Location: 1222815-1224476 bp Ori: ATC59947.1 Feature: domain Description: Cache_2 Location: 1222956-1223202 bp Feature: domain Description: Cache_2 Location: 1 222956-1 223202 bp Feature: domain Description: Tar Location: 1223313-1224474 bp Feature: domain Description: Tar Location: 1 22331 3-1 224474 bp Feature: gene Location: 1224614-1225096 bp Ori: ATC59948.1 Feature: domain Description: YehS Location: 1224620-1225058 bp Feature: domain Description: YehS Location: 1 224620-1 225058 bp Feature: gene Location: 1226115-1227587 bp Ori: ATC60046.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1226163-1226406 bp Feature: domain Description: RVT_N Location: 1 2261 63-1 226406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226451-1227078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 226451 -1 227078 bp Feature: domain Description: GIIM Note: maturase Location: 1227135-1227363 bp Feature: domain Description: GIIM Note: maturase Location: 1 2271 35-1 227363 bp Feature: gene Location: 1227503-1227701 bp Feature: gene Location: 1228059-1228157 bp Feature: gene Location: 1228166-1229335 bp Ori: ATC59949.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 1228361-1228508 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 228361 -1 228508 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1228565-1229276 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 228565-1 229276 bp Feature: gene Location: 1229502-1230578 bp Gene: ltrA Feature: domain Description: RVT_N Location: 1229505-1229706 bp Feature: domain Description: RVT_N Location: 1 229505-1 229706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229751-1230378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229751 -1 230378 bp Feature: domain Description: GIIM Note: maturase Location: 1230435-1230576 bp Feature: domain Description: GIIM Note: maturase Location: 1 230435-1 230576 bp Feature: gene Location: 1230659-1230979 bp Feature: gene Location: 1230976-1231329 bp Ori: ATC59951.1 Feature: domain Description: TnpB_IS66 Location: 1231003-1231285 bp Feature: domain Description: TnpB_IS66 Location: 1 231 003-1 231 285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), PRK12440 (acetate/propionate family kinase), InsA (COG3677), PRK05367 (aminomethyl-transferring glycine dehydrogenase)
PRK01202 (glycine cleavage system protein GcvH), HTH_23 (pfam13384), ComEC (COG2333), Cache_2 (smart01049), Tar (COG0840), YehS (COG4807), TnpB_IS66 (pfam05717)

Seq: CP023312.1 Vibrio anguillarum strain VIB12 plasmid p292, complete sequence (292095 bp)
Overview 1 RT 1: 3311-9419 bp 2 RT 2: 121271-127386 bp Neighborhood of RT #1 [3311, 9419] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C DUF2913 RVT_N RVT-GII GIIM Neighborhood of RT #2 [121271, 127481] RVT_N RVT-GII GIIM Transposase_mut DDE_Tnp_Tn3 Feature: gene Location: 3311-4864 bp Ori: ATC60358.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3446-3653 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3446-3653 bp Feature: domain Description: zf-IS66 Location: 3680-3812 bp Feature: domain Description: zf-IS66 Location: 3680-3812 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3872-4721 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3872 -472 1 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4742-4850 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4742 -4850 bp Feature: gene Location: 4978-5559 bp Ori: ATC60359.1 Feature: domain Description: DUF2913 Location: 5002-5530 bp Feature: domain Description: DUF2 913 Location: 5002 -5530 bp Feature: gene Location: 5747-7219 bp Ori: ATC60052.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5795-6038 bp Feature: domain Description: RVT_N Location: 5795-6038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6710 bp Feature: domain Description: GIIM Note: maturase Location: 6767-6995 bp Feature: domain Description: GIIM Note: maturase Location: 6767-6995 bp Feature: gene Location: 7905-8456 bp Feature: gene Location: 8571-9419 bp Feature: gene Location: 121271-121969 bp Feature: gene Location: 121959-122879 bp Feature: gene Location: 123560-125032 bp Ori: ATC60158.1 Gene: ltrA Feature: domain Description: RVT_N Location: 123608-123851 bp Feature: domain Description: RVT_N Location: 12 3608-12 3851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123896-124523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3896-12 452 3 bp Feature: domain Description: GIIM Note: maturase Location: 124580-124808 bp Feature: domain Description: GIIM Note: maturase Location: 12 4580-12 4808 bp Feature: gene Location: 125800-127038 bp Ori: ATC60159.1 Feature: domain Description: Transposase_mut Location: 125851-126940 bp Feature: domain Description: Transposase_mut Location: 12 5851-12 6940 bp Feature: gene Location: 127197-127481 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 127206-127386 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 12 72 06-12 7386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DUF2913 (pfam11140), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), DDE_Tnp_Tn3 (pfam01526)

Seq: CP023310.1 Vibrio anguillarum strain VIB12 chromosome 1, complete sequence (3323092 bp)
Overview 1 RT 1: 1143136-1152766 bp 2 RT 2: 1729539-1733376 bp 3 RT 3: 2426642-2433526 bp Neighborhood of RT #1 [1143136, 1152766] PRK12822 RVT_N RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 InsE RVT-GII GIIM RVT_N RVT-GII GIIM Neighborhood of RT #2 [1729539, 1733378] PHA01082 RVT_N RVT-GII GIIM RVT_N Neighborhood of RT #3 [2426642, 2433534] mpi RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM HTH_Tnp_ISL3 DDE_Tnp_ISL3 bcp Feature: gene Location: 1143136-1144212 bp Ori: ATC57131.1 Feature: domain Description: PRK12822 Location: 1143145-1144189 bp Feature: domain Description: PRK12822 Location: 1143 145-1144189 bp Feature: gene Location: 1144364-1144471 bp Feature: gene Location: 1145125-1145916 bp Feature: domain Description: RVT_N Location: 1145332-1145575 bp Feature: domain Description: RVT_N Location: 11453 3 2-1145575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145620-1145911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145620-1145911 bp Feature: gene Location: 1145948-1147480 bp Ori: ATC57132.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1146062-1146272 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1146062-1146272 bp Feature: domain Description: zf-IS66 Location: 1146296-1146428 bp Feature: domain Description: zf-IS66 Location: 1146296-1146428 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1146488-1147340 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1146488-11473 40 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1147358-1147466 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11473 58-1147466 bp Feature: gene Location: 1147540-1147893 bp Ori: ATC57133.1 Feature: domain Description: TnpB_IS66 Location: 1147567-1147849 bp Feature: domain Description: TnpB_IS66 Location: 1147567-1147849 bp Feature: gene Location: 1149350-1149608 bp Ori: ATC57135.1 Feature: domain Description: InsE Location: 1149365-1149608 bp Feature: domain Description: InsE Location: 11493 65-1149608 bp Feature: gene Location: 1148431-1149350 bp Feature: gene Location: 1149681-1150403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149699-1149894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149699-1149894 bp Feature: domain Description: GIIM Note: maturase Location: 1149951-1150179 bp Feature: domain Description: GIIM Note: maturase Location: 1149951-1150179 bp Feature: gene Location: 1150319-1150517 bp Feature: gene Location: 1150875-1152347 bp Ori: ATC57136.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1150923-1151166 bp Feature: domain Description: RVT_N Location: 1150923 -1151166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1151211-1151838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1151211-115183 8 bp Feature: domain Description: GIIM Note: maturase Location: 1151895-1152123 bp Feature: domain Description: GIIM Note: maturase Location: 1151895-1152123 bp Feature: gene Location: 1152396-1152635 bp Feature: gene Location: 1152539-1152766 bp Feature: gene Location: 1729539-1729859 bp Feature: gene Location: 1730013-1730171 bp Feature: domain Description: PHA01082 Location: 1730019-1730172 bp Feature: domain Description: PHA01082 Location: 173 0019-173 0172 bp Feature: gene Location: 1731141-1732613 bp Ori: ATC58962.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1731189-1731432 bp Feature: domain Description: RVT_N Location: 173 1189-173 143 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1731477-1732104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 1477-173 2104 bp Feature: domain Description: GIIM Note: maturase Location: 1732161-1732389 bp Feature: domain Description: GIIM Note: maturase Location: 173 2161-173 23 89 bp Feature: gene Location: 1732529-1732727 bp Feature: gene Location: 1733085-1733378 bp Feature: domain Description: RVT_N Location: 1733133-1733376 bp Feature: domain Description: RVT_N Location: 173 3 13 3 -173 3 3 76 bp Feature: gene Location: 2426642-2427295 bp Ori: ATC58156.1 Feature: domain Description: mpi Location: 2426648-2427194 bp Feature: domain Description: mpi Location: 2426648-2427194 bp Feature: gene Location: 2427342-2427539 bp Feature: gene Location: 2427455-2428927 bp Ori: ATC58157.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2427503-2427746 bp Feature: domain Description: RVT_N Location: 2427503 -2427746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427791-2428418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427791-2428418 bp Feature: domain Description: GIIM Note: maturase Location: 2428481-2428703 bp Feature: domain Description: GIIM Note: maturase Location: 2428481-2428703 bp Feature: gene Location: 2429274-2429472 bp Feature: gene Location: 2429388-2430860 bp Ori: ATC58984.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2429436-2429679 bp Feature: domain Description: RVT_N Location: 242943 6-2429679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2429724-2430351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2429724-243 03 51 bp Feature: domain Description: GIIM Note: maturase Location: 2430408-2430636 bp Feature: domain Description: GIIM Note: maturase Location: 243 0408-243 063 6 bp Feature: gene Location: 2431736-2432905 bp Ori: ATC58158.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 2431931-2432078 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 243 193 1-243 2078 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2432135-2432846 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 243 213 5-243 2846 bp Feature: gene Location: 2433400-2433534 bp Ori: ATC58159.1 Feature: domain Description: bcp Location: 2433403-2433526 bp Feature: domain Description: bcp Location: 243 3 403 -243 3 526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12822 (phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional), RVT_N (pfam13655), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), InsE (COG2963), GIIM (pfam08388)
PHA01082 (putative transcription regulator), mpi (PRK13413), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), bcp (PRK09437)