myRT

myRT report for GCA_002310635.1_ASM231063v1

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Seq: CP023388.1 Escherichia coli strain 1105 chromosome, complete genome (5059652 bp)
Overview 1 RT 1: 105898-109750 bp 2 RT 2: 113507-117478 bp 3 RT 3: 137328-141429 bp 4 RT 4: 184296-187806 bp Neighborhood of RT #1 [105898, 109779] DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [113507, 117489] PHA02517 RVT-GII GIIM RVT-GII FHA_bHelix FHA_bHelix FHA_bHelix Neighborhood of RT #3 [137328, 141443] InsG RVT-GII GIIM rve_2 Neighborhood of RT #4 [184296, 187806] COG3547 RVT-GII Feature: gene Location: 105898-106277 bp Feature: gene Location: 106313-106504 bp Ori: ATC15248.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 106370-106481 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 06370-1 06481 bp Feature: gene Location: 106576-107701 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106672-107200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06672-1 07200 bp Feature: gene Location: 107841-109412 bp Ori: ATC15249.1 Feature: domain Description: LZ_Tnp_IS66 Location: 107979-108201 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 07979-1 08201 bp Feature: domain Description: zf-IS66 Location: 108225-108357 bp Feature: domain Description: zf-IS66 Location: 1 08225-1 08357 bp Feature: domain Description: DDE_Tnp_IS66 Location: 108402-109257 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 08402-1 09257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 109278-109389 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 09278-1 09389 bp Feature: gene Location: 109432-109779 bp Ori: ATC15250.1 Feature: domain Description: TnpB_IS66 Location: 109459-109750 bp Feature: domain Description: TnpB_IS66 Location: 1 09459-1 09750 bp Feature: gene Location: 113507-113677 bp Feature: gene Location: 113762-114010 bp Ori: ATC15254.1 Feature: domain Description: PHA02517 Location: 113771-113954 bp Feature: domain Description: PHA0251 7 Location: 1 1 3771 -1 1 3954 bp Feature: gene Location: 113982-114779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113988-114159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3988-1 1 41 59 bp Feature: domain Description: GIIM Note: maturase Location: 114276-114456 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 4276-1 1 4456 bp Feature: gene Location: 114795-115607 bp Ori: ATC15255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115068-115524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5068-1 1 5524 bp Feature: gene Location: 115877-116243 bp Feature: gene Location: 116245-117489 bp Feature: domain Description: FHA_bHelix Location: 116254-116560 bp Feature: domain Description: FHA_bHelix Location: 1 1 6254-1 1 6560 bp Feature: domain Description: FHA_bHelix Location: 116794-117169 bp Feature: domain Description: FHA_bHelix Location: 1 1 6794-1 1 71 69 bp Feature: domain Description: FHA_bHelix Location: 117379-117478 bp Feature: domain Description: FHA_bHelix Location: 1 1 7379-1 1 7478 bp Feature: gene Location: 137328-137507 bp Feature: gene Location: 137975-138895 bp Feature: domain Description: InsG Location: 137978-138893 bp Feature: domain Description: InsG Location: 1 37978-1 38893 bp Feature: gene Location: 139282-140670 bp Ori: ATC15266.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139612-140230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3961 2-1 40230 bp Feature: domain Description: GIIM Note: maturase Location: 140278-140509 bp Feature: domain Description: GIIM Note: maturase Location: 1 40278-1 40509 bp Feature: gene Location: 140895-141168 bp Feature: gene Location: 141291-141443 bp Ori: ATC15267.1 Feature: domain Description: rve_2 Location: 141321-141429 bp Feature: domain Description: rve_2 Location: 1 41 321 -1 41 429 bp Feature: gene Location: 184296-184409 bp Feature: gene Location: 184548-185550 bp Feature: domain Description: COG3547 Location: 184566-184857 bp Feature: domain Description: COG3547 Location: 1 84566-1 84857 bp Feature: gene Location: 185789-187123 bp Ori: ATC19737.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186074-186761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 86074-1 86761 bp Feature: gene Location: 187194-187426 bp Feature: gene Location: 187621-187806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), FHA_bHelix (sd00046), InsG (COG3385)
rve_2 (pfam13333), COG3547 (Transposase )