myRT

myRT report for GCA_002310815.1_ASM231081v1

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Seq: CP011033.1 Pseudoalteromonas tunicata strain D2 chromosome II, complete sequence (980475 bp)
Overview 1 RT 1: 58154-62390 bp 2 RT 2: 190479-196266 bp 3 RT 3: 923656-927034 bp Neighborhood of RT #1 [58154, 62390] RVT-GII Neighborhood of RT #2 [190479, 196266] RVT-GII Neighborhood of RT #3 [923656, 927051] Rhomboid RVT-GII group_II_RT_mat GATase1_PfpI_2 Feature: gene Location: 58154-58378 bp Feature: gene Location: 58742-59701 bp Feature: gene Location: 60286-61575 bp Ori: ATC96530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60541-61207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60541 -61 207 bp Feature: gene Location: 61707-62093 bp Feature: gene Location: 62178-62390 bp Feature: gene Location: 190479-190613 bp Feature: gene Location: 190827-191435 bp Feature: gene Location: 192049-193338 bp Ori: ATC96647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192304-192970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92304-1 92970 bp Feature: gene Location: 193509-194399 bp Feature: gene Location: 195292-196266 bp Feature: gene Location: 923656-924276 bp Ori: ATC97220.1 Feature: domain Description: Rhomboid Location: 923812-924229 bp Feature: domain Description: Rhomboid Location: 92381 2-924229 bp Feature: gene Location: 924421-924570 bp Feature: gene Location: 925038-925874 bp Ori: ATC97222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925293-925866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925293-925866 bp Feature: gene Location: 925892-926341 bp Ori: ATC97223.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 925898-926234 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 925898-926234 bp Feature: gene Location: 926473-927051 bp Ori: ATC97224.1 Feature: domain Description: GATase1_PfpI_2 Location: 926482-927034 bp Feature: domain Description: GATase1 _PfpI_2 Location: 926482-927034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rhomboid (pfam01694), group_II_RT_mat (TIGR04416), GATase1_PfpI_2 (cd03139)

Seq: CP011032.1 Pseudoalteromonas tunicata strain D2 chromosome I, complete sequence (3978968 bp)
Overview 1 RT 1: 643492-648684 bp 2 RT 2: 1378210-1382154 bp 3 RT 3: 2263056-2267808 bp 4 RT 4: 2459838-2463968 bp 5 RT 5: 2665858-2670089 bp Neighborhood of RT #1 [643492, 648689] CheY TIGR00276 Nnr1 RVT-GII Nnr2 PRK10646 Neighborhood of RT #2 [1378210, 1382154] TIR-like RVT-GII group_II_RT_mat Neighborhood of RT #3 [2263056, 2267813] group_II_RT_mat RVT-GII integrase_gron Neighborhood of RT #4 [2459838, 2463968] COG3547 Tryp_SPc RVT-GII Neighborhood of RT #5 [2665858, 2670094] HEAT_2 RVT-GII RVT-GII integrase_gron Feature: gene Location: 643492-644613 bp Ori: ATC93438.1 Feature: domain Description: CheY Location: 643498-643846 bp Feature: domain Description: CheY Location: 643498-643846 bp Feature: gene Location: 644636-645763 bp Ori: ATC93439.1 Feature: domain Description: TIGR00276 Location: 644681-645686 bp Feature: domain Description: TIGR002 76 Location: 644681-645686 bp Feature: gene Location: 645776-647833 bp Ori: ATC93440.1 Gene: nnr Feature: domain Description: Nnr1 Location: 645818-646409 bp Feature: domain Description: Nnr1 Location: 645818-646409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647000-647465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647000-647465 bp Feature: gene Location: 647924-648223 bp Ori: ATC93441.1 Feature: domain Description: Nnr2 Location: 647942-648218 bp Feature: domain Description: Nnr2 Location: 647942 -6482 18 bp Feature: gene Location: 648240-648689 bp Ori: ATC93442.1 Gene: tsaE Feature: domain Description: PRK10646 Location: 648258-648684 bp Feature: domain Description: PRK10646 Location: 6482 58-648684 bp Feature: gene Location: 1378210-1379127 bp Ori: ATC94124.1 Feature: domain Description: TIR-like Location: 1378714-1379065 bp Feature: domain Description: TIR-like Location: 1378714-1379065 bp Feature: gene Location: 1379624-1379881 bp Feature: gene Location: 1380509-1381345 bp Ori: ATC94126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1380764-1381337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1380764-1381337 bp Feature: gene Location: 1381363-1381812 bp Ori: ATC94127.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1381366-1381705 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1381366-1381705 bp Feature: gene Location: 1382029-1382154 bp Feature: gene Location: 2263056-2263349 bp Feature: gene Location: 2263493-2263942 bp Ori: ATC94924.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2263496-2263835 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 2 63496-2 2 63835 bp Feature: gene Location: 2263960-2264796 bp Ori: ATC94925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2264215-2264788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 642 15-2 2 64788 bp Feature: gene Location: 2266326-2266595 bp Feature: gene Location: 2266842-2267813 bp Ori: ATC94927.1 Feature: domain Description: integrase_gron Location: 2266863-2267808 bp Feature: domain Description: integrase_gron Location: 2 2 66863-2 2 67808 bp Feature: gene Location: 2459838-2460596 bp Ori: ATC95130.1 Feature: domain Description: COG3547 Location: 2459865-2460579 bp Feature: domain Description: COG3547 Location: 2 459865-2 460579 bp Feature: gene Location: 2460639-2461433 bp Ori: ATC95131.1 Feature: domain Description: Tryp_SPc Location: 2460789-2461419 bp Feature: domain Description: Tryp_SPc Location: 2 460789-2 461419 bp Feature: gene Location: 2461603-2462892 bp Ori: ATC95132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461858-2462524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 461858-2 462 52 4 bp Feature: gene Location: 2463393-2463512 bp Feature: gene Location: 2463528-2463968 bp Feature: gene Location: 2665858-2666277 bp Feature: gene Location: 2666364-2666744 bp Ori: ATC95313.1 Feature: domain Description: HEAT_2 Location: 2666415-2666574 bp Feature: domain Description: HEAT_2 Location: 2 666415-2 666574 bp Feature: gene Location: 2666861-2667433 bp Ori: ATC95314.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666876-2667065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 666876-2 667065 bp Feature: gene Location: 2667565-2668149 bp Ori: ATC95315.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2667820-2668138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 66782 0-2 668138 bp Feature: gene Location: 2668763-2669395 bp Feature: gene Location: 2669642-2670094 bp Ori: ATC95317.1 Feature: domain Description: integrase_gron Location: 2669663-2670089 bp Feature: domain Description: integrase_gron Location: 2 669663-2 670089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), TIGR00276 (epoxyqueuosine reductase), Nnr1 (COG0062), RVT-GII, Nnr2 (COG0063), PRK10646 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE), TIR-like (pfam10137), group_II_RT_mat (TIGR04416), integrase_gron (TIGR02249), COG3547 (Transposase )
Tryp_SPc (smart00020), HEAT_2 (pfam13646)