myRT

myRT report for GCA_002313025.1_ASM231302v1

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Seq: CP016988.1 Vibrio cholerae strain FORC_055 chromosome 2, complete sequence (1067461 bp)
Overview 1 RT 1: 305611-313315 bp Neighborhood of RT #1 [305611, 313341] MPP_MS158 RVT-GII GIIM DDE_Tnp_1_5 YuxH Feature: gene Location: 305611-306135 bp Ori: ATD28927.1 Feature: domain Description: MPP_MS158 Location: 305641-306082 bp Feature: domain Description: MPP_MS1 58 Location: 305641 -306082 bp Feature: gene Location: 307375-309714 bp Feature: gene Location: 310185-310865 bp Ori: ATD28929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310191-310527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 01 91 -31 0527 bp Feature: domain Description: GIIM Note: maturase Location: 310587-310812 bp Feature: domain Description: GIIM Note: maturase Location: 31 0587-31 081 2 bp Feature: gene Location: 310922-311842 bp Ori: ATD28930.1 Feature: domain Description: DDE_Tnp_1_5 Location: 310979-311309 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 31 0979-31 1 309 bp Feature: gene Location: 312100-313341 bp Ori: ATD28931.1 Feature: domain Description: YuxH Location: 312112-313315 bp Feature: domain Description: YuxH Location: 31 21 1 2-31 331 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_MS158 (cd07404), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_5 (pfam13737), YuxH (COG3434)

Seq: CP016987.1 Vibrio cholerae strain FORC_055 chromosome 1, complete sequence (3028272 bp)
Overview 1 RT 1: 1220804-1225717 bp Neighborhood of RT #1 [1220804, 1225717] PHA00430 PHA00653 PHA00653 PHA00652 RVT-DGRs Feature: gene Location: 1220804-1222798 bp Ori: ATD27096.1 Feature: domain Description: PHA00430 Location: 1220966-1221431 bp Feature: domain Description: PHA00430 Location: 12 2 0966-12 2 1431 bp Feature: domain Description: PHA00653 Location: 1221581-1221776 bp Feature: domain Description: PHA00653 Location: 12 2 1581-12 2 1776 bp Feature: domain Description: PHA00653 Location: 1221926-1222793 bp Feature: domain Description: PHA00653 Location: 12 2 192 6-12 2 2 793 bp Feature: gene Location: 1222856-1223179 bp Ori: ATD27097.1 Feature: domain Description: PHA00652 Location: 1222859-1223174 bp Feature: domain Description: PHA00652 Location: 12 2 2 859-12 2 3174 bp Feature: gene Location: 1223457-1224491 bp Ori: ATD27098.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1223667-1224351 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 2 3667-12 2 4351 bp Feature: gene Location: 1224671-1225375 bp Feature: gene Location: 1225379-1225717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00430 (tail fiber protein), PHA00653 (mtd;major tropism determinant), PHA00652 (hypothetical protein), RVT-DGRs