myRT

myRT report for GCA_002334625.1_ASM233462v1

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Seq: CP023424.1 Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence (195692 bp)
Overview 1 RT 1: 23036-28889 bp Neighborhood of RT #1 [23036, 29008] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 23036-24730 bp Ori: ATD79682.1 Feature: domain Description: VirB4 Location: 23354-24038 bp Feature: domain Description: VirB4 Location: 23354-24038 bp Feature: gene Location: 24998-25231 bp Feature: gene Location: 25418-27295 bp Ori: ATD79684.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25733-26471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25733-26471 bp Feature: domain Description: HNHc Note: nucleases Location: 27029-27182 bp Feature: domain Description: HNHc Note: nucleases Location: 27029-271 82 bp Feature: gene Location: 27483-27803 bp Feature: gene Location: 27803-29008 bp Ori: ATD79686.1 Feature: domain Description: Glucosaminidase Location: 28079-28475 bp Feature: domain Description: Glucosaminidase Location: 28079-28475 bp Feature: domain Description: Peptidase_M23 Location: 28652-28889 bp Feature: domain Description: Peptidase_M23 Location: 28652-28889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP023423.1 Enterococcus faecium strain K60-39 chromosome, complete genome (2739582 bp)
Overview 1 RT 1: 2614033-2618837 bp Neighborhood of RT #1 [2614033, 2618851] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 2614033-2615217 bp Ori: ATD79476.1 Feature: domain Description: HTH_XRE Location: 2614063-2614207 bp Feature: domain Description: HTH_XRE Location: 2 614063-2 6142 07 bp Feature: domain Description: Rol_Rep_N Location: 2614240-2614504 bp Feature: domain Description: Rol_Rep_N Location: 2 6142 40-2 614504 bp Feature: domain Description: Rep_trans Location: 2614528-2615140 bp Feature: domain Description: Rep_trans Location: 2 61452 8-2 615140 bp Feature: gene Location: 2615214-2615351 bp Ori: ATD79477.1 Feature: domain Description: DUF3789 Location: 2615241-2615334 bp Feature: domain Description: DUF3789 Location: 2 6152 41-2 615334 bp Feature: gene Location: 2616097-2618007 bp Ori: ATD79478.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2616430-2617168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 616430-2 617168 bp Feature: domain Description: HNHc Note: nucleases Location: 2617723-2617888 bp Feature: domain Description: HNHc Note: nucleases Location: 2 61772 3-2 617888 bp Feature: gene Location: 2618111-2618335 bp Feature: gene Location: 2618348-2618851 bp Ori: ATD79480.1 Feature: domain Description: ArdA Location: 2618366-2618837 bp Feature: domain Description: ArdA Location: 2 618366-2 618837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: CP023425.1 Enterococcus faecium strain K60-39 plasmid pTT39_p2, complete sequence (86216 bp)
Overview 1 RT 1: 26942-32789 bp Neighborhood of RT #1 [26942, 32908] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 26942-28636 bp Ori: ATD79869.1 Feature: domain Description: VirB4 Location: 27260-27944 bp Feature: domain Description: VirB4 Location: 27260-27944 bp Feature: gene Location: 28904-29137 bp Feature: gene Location: 29324-31201 bp Ori: ATD79871.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29639-30377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2963 9-3 03 77 bp Feature: domain Description: HNHc Note: nucleases Location: 30935-31088 bp Feature: domain Description: HNHc Note: nucleases Location: 3 093 5-3 1088 bp Feature: gene Location: 31389-31709 bp Feature: gene Location: 31709-32908 bp Ori: ATD79873.1 Feature: domain Description: Glucosaminidase Location: 31979-32375 bp Feature: domain Description: Glucosaminidase Location: 3 1979-3 23 75 bp Feature: domain Description: Peptidase_M23 Location: 32552-32789 bp Feature: domain Description: Peptidase_M23 Location: 3 2552-3 2789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)