myRT

myRT report for GCA_002355275.1_ASM235527v1

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Seq: CP023449.1 Rhizorhabdus dicambivorans strain Ndbn-20 chromosome, complete genome (5026772 bp)
Overview 1 RT 1: 2780605-2786343 bp 2 RT 2: 3352264-3358953 bp 3 RT 3: 4186453-4193292 bp Neighborhood of RT #1 [2780605, 2786426] HTH_XRE RVT-GII Intron_maturas2 ArdC xerC xerC Neighborhood of RT #2 [3352264, 3358991] xerC xerC ArdC RVT-GII COG4584 PRK06526 Neighborhood of RT #3 [4186453, 4193375] DUF2285 LZ_Tnp_IS481 HTH_LacI rve RVT-GII Intron_maturas2 ArdC xerC xerC Feature: gene Location: 2780605-2780862 bp Ori: ATE65239.1 Feature: domain Description: HTH_XRE Location: 2780647-2780794 bp Feature: domain Description: HTH_XRE Location: 2780647-2780794 bp Feature: gene Location: 2780945-2781199 bp Feature: gene Location: 2781362-2783227 bp Ori: ATE65240.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781629-2782460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781 629-2782460 bp Feature: domain Description: Intron_maturas2 Location: 2782598-2782859 bp Feature: domain Description: Intron_maturas2 Location: 2782598-2782859 bp Feature: gene Location: 2784122-2784919 bp Ori: ATE65241.1 Feature: domain Description: ArdC Location: 2784173-2784884 bp Feature: domain Description: ArdC Location: 27841 73-2784884 bp Feature: gene Location: 2785077-2786426 bp Ori: ATE65242.1 Feature: domain Description: xerC Location: 2785167-2786202 bp Feature: domain Description: xerC Location: 27851 67-2786202 bp Feature: domain Description: xerC Location: 2786277-2786343 bp Feature: domain Description: xerC Location: 2786277-2786343 bp Feature: gene Location: 3352264-3353613 bp Ori: ATE65688.1 Feature: domain Description: xerC Location: 3352354-3353389 bp Feature: domain Description: xerC Location: 3352354-3353389 bp Feature: domain Description: xerC Location: 3353464-3353530 bp Feature: domain Description: xerC Location: 3353464-3353530 bp Feature: gene Location: 3353771-3354568 bp Ori: ATE65689.1 Feature: domain Description: ArdC Location: 3353828-3354536 bp Feature: domain Description: ArdC Location: 3353828-3354536 bp Feature: gene Location: 3355449-3356558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355716-3356547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335571 6-3356547 bp Feature: gene Location: 3356659-3358179 bp Ori: ATE65690.1 Feature: domain Description: COG4584 Location: 3356713-3357511 bp Feature: domain Description: COG4584 Location: 335671 3-335751 1 bp Feature: gene Location: 3358191-3358991 bp Ori: ATE67383.1 Feature: domain Description: PRK06526 Location: 3358248-3358953 bp Feature: domain Description: PRK06526 Location: 3358248-3358953 bp Feature: gene Location: 4186453-4187052 bp Ori: ATE66344.1 Feature: domain Description: DUF2285 Location: 4186753-4187029 bp Feature: domain Description: DUF2285 Location: 41 86753-41 87029 bp Feature: gene Location: 4187236-4188216 bp Ori: ATE66345.1 Feature: domain Description: LZ_Tnp_IS481 Location: 4187239-4187491 bp Feature: domain Description: LZ_Tnp_IS481 Location: 41 87239-41 87491 bp Feature: domain Description: HTH_LacI Location: 4187506-4187566 bp Feature: domain Description: HTH_LacI Location: 41 87506-41 87566 bp Feature: domain Description: rve Location: 4187626-4188055 bp Feature: domain Description: rve Location: 41 87626-41 88055 bp Feature: gene Location: 4188328-4190193 bp Ori: ATE66346.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4188595-4189426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 88595-41 89426 bp Feature: domain Description: Intron_maturas2 Location: 4189564-4189825 bp Feature: domain Description: Intron_maturas2 Location: 41 89564-41 89825 bp Feature: gene Location: 4191077-4191868 bp Ori: ATE66347.1 Feature: domain Description: ArdC Location: 4191134-4191836 bp Feature: domain Description: ArdC Location: 41 91 1 34-41 91 836 bp Feature: gene Location: 4192026-4193375 bp Ori: ATE66348.1 Feature: domain Description: xerC Location: 4192116-4193151 bp Feature: domain Description: xerC Location: 41 921 1 6-41 931 51 bp Feature: domain Description: xerC Location: 4193226-4193292 bp Feature: domain Description: xerC Location: 41 93226-41 93292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, Intron_maturas2 (pfam01348), ArdC (COG4227), xerC (PRK01287), COG4584 (Transposase ), PRK06526 (transposase; Provisional), DUF2285 (pfam10074), LZ_Tnp_IS481 (pfam13011), HTH_LacI (cd01392)
rve (pfam00665)

Seq: CP023450.1 Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence (163626 bp)
Overview 1 RT 1: 80038-85334 bp Neighborhood of RT #1 [80038, 85339] LZ_Tnp_IS481 HTH_LacI rve RVT-GII Intron_maturas2 DUF3768 Feature: gene Location: 80038-80589 bp Feature: gene Location: 80653-81633 bp Ori: ATE67626.1 Feature: domain Description: LZ_Tnp_IS481 Location: 80656-80908 bp Feature: domain Description: LZ_Tnp_IS481 Location: 80656-80908 bp Feature: domain Description: HTH_LacI Location: 80923-80983 bp Feature: domain Description: HTH_LacI Location: 8092 3-80983 bp Feature: domain Description: rve Location: 81043-81472 bp Feature: domain Description: rve Location: 81043-81472 bp Feature: gene Location: 81820-83685 bp Ori: ATE67627.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82087-82918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 087-82 918 bp Feature: domain Description: Intron_maturas2 Location: 83056-83317 bp Feature: domain Description: Intron_maturas2 Location: 83056-83317 bp Feature: gene Location: 84412-84639 bp Feature: gene Location: 84971-85339 bp Ori: ATE67629.1 Feature: domain Description: DUF3768 Location: 85064-85334 bp Feature: domain Description: DUF3768 Location: 85064-85334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS481 (pfam13011), HTH_LacI (cd01392), rve (pfam00665), RVT-GII, Intron_maturas2 (pfam01348), DUF3768 (pfam12599)