myRT

myRT report for GCA_002355475.1_ASM235547v1

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Seq: AP014862.1 Pseudomonas pseudoalcaligenes KF707 = NBRC 110670 DNA, complete genome (6183134 bp)
Overview 1 RT 1: 145467-152476 bp 2 RT 2: 255626-262888 bp 3 RT 3: 423220-431994 bp 4 RT 4: 655381-661943 bp 5 RT 5: 1285306-1292024 bp 6 RT 6: 1748298-1754225 bp 7 RT 7: 1799040-1808486 bp 8 RT 8: 2165463-2172950 bp 9 RT 9: 2335517-2347934 bp 10 RT 10: 4171093-4176998 bp 11 RT 11: 4303850-4309921 bp Neighborhood of RT #1 [145467, 152556] PRK10060 OLE1 DDE_Tnp_ISL3 RVT-GII GIIM LysR Neighborhood of RT #2 [255626, 262899] PqqL PqqL RVT_N RVT-GII YkfC HNHc PRK10416 Neighborhood of RT #3 [423220, 431999] FimD RVT-GII GIIM HcaE FNR_iron_sulfur_binding_1 PRK07609 Neighborhood of RT #4 [655381, 661943] galactar-dH20 HPPR RVT-GII GIIM OprD Neighborhood of RT #5 [1285306, 1292044] 3beta-17beta-HSD_like_SDR_c PA_degradation_oxidoreductase_like PRK07609 RVT-GII GIIM SDR_c PRK07656 Neighborhood of RT #6 [1748298, 1754227] PHA02517 InsE RVT_N RVT-GII GIIM IS5 Toluene_X Neighborhood of RT #7 [1799040, 1808497] RidA PDR_like PRK07609 RVT-GII GIIM RVT-GII GIIM PRK10702 Neighborhood of RT #8 [2165463, 2172958] lipid_A_lpxH PRK10791 RVT_N RVT-GII YkfC HNH PRK05347 cysS Neighborhood of RT #9 [2335517, 2347934] PRK13876 AAA RVT-G2L4 IS5 Neighborhood of RT #10 [4171093, 4177003] PucR PhyH RVT-GII GIIM CytC553 CytC553 Neighborhood of RT #11 [4303850, 4309926] PleD PRK10700 RVT-GII GIIM ScpB ScpA Feature: gene Location: 145467-147371 bp Ori: BAU71826.1 Feature: domain Description: PRK10060 Location: 145716-147357 bp Feature: domain Description: PRK1 0060 Location: 1 4571 6-1 47357 bp Feature: gene Location: 147548-148732 bp Ori: BAU71827.1 Feature: domain Description: OLE1 Location: 147578-148313 bp Feature: domain Description: OLE1 Location: 1 47578-1 4831 3 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 148358-148709 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 48358-1 48709 bp Feature: gene Location: 149324-150406 bp Ori: BAU71828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149372-149987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 49372-1 49987 bp Feature: domain Description: GIIM Note: maturase Location: 150044-150272 bp Feature: domain Description: GIIM Note: maturase Location: 1 50044-1 50272 bp Feature: gene Location: 151298-151501 bp Feature: gene Location: 151591-152556 bp Ori: BAU71830.1 Feature: domain Description: LysR Location: 151600-152476 bp Feature: domain Description: LysR Location: 1 51 600-1 52476 bp Feature: gene Location: 255626-257113 bp Ori: BAU71925.1 Feature: domain Description: PqqL Location: 255815-257054 bp Feature: domain Description: PqqL Location: 25581 5-257054 bp Feature: gene Location: 257106-258461 bp Ori: BAU71926.1 Feature: domain Description: PqqL Location: 257172-258447 bp Feature: domain Description: PqqL Location: 2571 72-258447 bp Feature: gene Location: 259588-261321 bp Ori: BAU71927.1 Feature: domain Description: RVT_N Location: 259648-259888 bp Feature: domain Description: RVT_N Location: 259648-259888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259939-260587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259939-260587 bp Feature: domain Description: YkfC Location: 260743-260968 bp Feature: domain Description: YkfC Location: 260743-260968 bp Feature: domain Description: HNHc Note: nucleases Location: 261124-261280 bp Feature: domain Description: HNHc Note: nucleases Location: 261 1 24-261 280 bp Feature: gene Location: 261373-261489 bp Feature: gene Location: 261529-262899 bp Ori: BAU71929.1 Feature: domain Description: PRK10416 Location: 261814-262888 bp Feature: domain Description: PRK1 041 6 Location: 261 81 4-262888 bp Feature: gene Location: 423220-425820 bp Ori: BAU72074.1 Feature: domain Description: FimD Location: 423259-425779 bp Feature: domain Description: FimD Location: 423259-425779 bp Feature: gene Location: 425995-426303 bp Feature: gene Location: 427159-428526 bp Ori: BAU72076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427492-428107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427492-4281 07 bp Feature: domain Description: GIIM Note: maturase Location: 428164-428392 bp Feature: domain Description: GIIM Note: maturase Location: 4281 64-428392 bp Feature: gene Location: 429246-430535 bp Ori: BAU72077.1 Feature: domain Description: HcaE Location: 429336-430494 bp Feature: domain Description: HcaE Location: 429336-430494 bp Feature: gene Location: 430899-431999 bp Ori: BAU72078.1 Feature: domain Description: FNR_iron_sulfur_binding_1 Location: 430962-431655 bp Feature: domain Description: FNR_iron_sulfur_binding_1 Location: 430962-431 655 bp Feature: domain Description: PRK07609 Location: 431751-431994 bp Feature: domain Description: PRK07609 Location: 431 751 -431 994 bp Feature: gene Location: 655381-656937 bp Ori: BAU72284.1 Feature: domain Description: galactar-dH20 Location: 655417-656935 bp Feature: domain Description: galactar-dH20 Location: 65541 7-656935 bp Feature: gene Location: 656986-657903 bp Ori: BAU72285.1 Feature: domain Description: HPPR Location: 656992-657871 bp Feature: domain Description: HPPR Location: 656992-657871 bp Feature: gene Location: 658546-659913 bp Ori: BAU72286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658879-659494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658879-659494 bp Feature: domain Description: GIIM Note: maturase Location: 659551-659779 bp Feature: domain Description: GIIM Note: maturase Location: 659551 -659779 bp Feature: gene Location: 660339-661601 bp Ori: BAU72287.1 Feature: domain Description: OprD Location: 660432-661596 bp Feature: domain Description: OprD Location: 660432-661 596 bp Feature: gene Location: 661629-661943 bp Feature: gene Location: 1285306-1286064 bp Ori: BAU72875.1 Feature: domain Description: 3beta-17beta-HSD_like_SDR_c Location: 1285312-1286050 bp Feature: domain Description: 3beta-1 7beta-HSD_like_SDR_c Location: 1 28531 2-1 286050 bp Feature: gene Location: 1286078-1287136 bp Ori: BAU72876.1 Feature: domain Description: PA_degradation_oxidoreductase_like Location: 1286132-1286804 bp Feature: domain Description: PA_degradation_oxidoreductase_like Location: 1 2861 32-1 286804 bp Feature: domain Description: PRK07609 Location: 1286876-1287104 bp Feature: domain Description: PRK07609 Location: 1 286876-1 2871 04 bp Feature: gene Location: 1287572-1288939 bp Ori: BAU72877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287905-1288520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 287905-1 288520 bp Feature: domain Description: GIIM Note: maturase Location: 1288577-1288805 bp Feature: domain Description: GIIM Note: maturase Location: 1 288577-1 288805 bp Feature: gene Location: 1289633-1290406 bp Ori: BAU72878.1 Feature: domain Description: SDR_c Location: 1289660-1290362 bp Feature: domain Description: SDR_c Location: 1 289660-1 290362 bp Feature: gene Location: 1290470-1292044 bp Ori: BAU72879.1 Feature: domain Description: PRK07656 Location: 1290491-1292024 bp Feature: domain Description: PRK07656 Location: 1 290491 -1 292024 bp Feature: gene Location: 1748298-1749008 bp Ori: BAU73305.1 Feature: domain Description: PHA02517 Location: 1748304-1748988 bp Feature: domain Description: PHA0251 7 Location: 1 748304-1 748988 bp Feature: gene Location: 1749165-1749473 bp Ori: BAU73306.1 Feature: domain Description: InsE Location: 1749180-1749465 bp Feature: domain Description: InsE Location: 1 7491 80-1 749465 bp Feature: gene Location: 1750504-1752009 bp Ori: BAU73307.1 Feature: domain Description: RVT_N Location: 1750585-1750810 bp Feature: domain Description: RVT_N Location: 1 750585-1 75081 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750861-1751503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 750861 -1 751 503 bp Feature: domain Description: GIIM Note: maturase Location: 1751554-1751788 bp Feature: domain Description: GIIM Note: maturase Location: 1 751 554-1 751 788 bp Feature: gene Location: 1752151-1752540 bp Ori: BAU73308.1 Feature: domain Description: IS5 Location: 1752157-1752514 bp Feature: domain Description: IS5 Location: 1 7521 57-1 75251 4 bp Feature: gene Location: 1752854-1754227 bp Ori: BAU73309.1 Feature: domain Description: Toluene_X Location: 1752905-1754225 bp Feature: domain Description: Toluene_X Location: 1 752905-1 754225 bp Feature: gene Location: 1799040-1799474 bp Ori: BAU73354.1 Feature: domain Description: RidA Location: 1799076-1799442 bp Feature: domain Description: RidA Location: 1 799076-1 799442 bp Feature: gene Location: 1799489-1800448 bp Ori: BAU73355.1 Feature: domain Description: PDR_like Location: 1799534-1800152 bp Feature: domain Description: PDR_like Location: 1 799534-1 8001 52 bp Feature: domain Description: PRK07609 Location: 1800188-1800416 bp Feature: domain Description: PRK07609 Location: 1 8001 88-1 80041 6 bp Feature: gene Location: 1800989-1802356 bp Ori: BAU73356.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801322-1801937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 322-1 801 937 bp Feature: domain Description: GIIM Note: maturase Location: 1801994-1802222 bp Feature: domain Description: GIIM Note: maturase Location: 1 801 994-1 802222 bp Feature: gene Location: 1803420-1804646 bp Feature: gene Location: 1805164-1806531 bp Ori: BAU73358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1805497-1806112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 805497-1 8061 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 1806169-1806397 bp Feature: domain Description: GIIM Note: maturase Location: 1 8061 69-1 806397 bp Feature: gene Location: 1807572-1807751 bp Feature: gene Location: 1807859-1808497 bp Ori: BAU73360.1 Feature: domain Description: PRK10702 Location: 1807862-1808486 bp Feature: domain Description: PRK1 0702 Location: 1 807862-1 808486 bp Feature: gene Location: 2165463-2166185 bp Ori: BAU73690.1 Feature: domain Description: lipid_A_lpxH Location: 2165472-2166156 bp Feature: domain Description: lipid_A_lpxH Location: 21 65472-21 661 56 bp Feature: gene Location: 2166182-2166676 bp Ori: BAU73691.1 Feature: domain Description: PRK10791 Location: 2166185-2166674 bp Feature: domain Description: PRK1 0791 Location: 21 661 85-21 66674 bp Feature: gene Location: 2166797-2168512 bp Ori: BAU73692.1 Feature: domain Description: RVT_N Location: 2166851-2167094 bp Feature: domain Description: RVT_N Location: 21 66851 -21 67094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2167139-2167775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 671 39-21 67775 bp Feature: domain Description: YkfC Location: 2167970-2168177 bp Feature: domain Description: YkfC Location: 21 67970-21 681 77 bp Feature: domain Description: HNH Note: nucleases Location: 2168324-2168462 bp Feature: domain Description: HNH Note: nucleases Location: 21 68324-21 68462 bp Feature: gene Location: 2169906-2171573 bp Ori: BAU73693.1 Feature: domain Description: PRK05347 Location: 2169921-2171568 bp Feature: domain Description: PRK05347 Location: 21 69921 -21 71 568 bp Feature: gene Location: 2171570-2172958 bp Ori: BAU73694.1 Feature: domain Description: cysS Location: 2171576-2172950 bp Feature: domain Description: cysS Location: 21 71 576-21 72950 bp Feature: gene Location: 2335517-2337508 bp Ori: BAU73845.1 Feature: domain Description: PRK13876 Location: 2335520-2337506 bp Feature: domain Description: PRK1 3876 Location: 2335520-2337506 bp Feature: gene Location: 2338816-2342508 bp Ori: BAU73846.1 Feature: domain Description: AAA Location: 2338960-2339188 bp Feature: domain Description: AAA Location: 2338960-23391 88 bp Feature: gene Location: 2343776-2344639 bp Ori: BAU73847.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2343779-2344208 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2343779-2344208 bp Feature: gene Location: 2346355-2347341 bp Ori: BAU73848.1 Feature: domain Description: IS5 Location: 2346541-2347318 bp Feature: domain Description: IS5 Location: 2346541 -234731 8 bp Feature: gene Location: 2347809-2347934 bp Feature: gene Location: 4171093-4172292 bp Ori: BAU75503.1 Feature: domain Description: PucR Location: 4171132-4172266 bp Feature: domain Description: PucR Location: 41 71 1 32-41 72266 bp Feature: gene Location: 4172610-4173479 bp Ori: BAU75504.1 Feature: domain Description: PhyH Location: 4172694-4173285 bp Feature: domain Description: PhyH Location: 41 72694-41 73285 bp Feature: gene Location: 4173756-4175051 bp Ori: BAU75505.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174017-4174629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7401 7-41 74629 bp Feature: domain Description: GIIM Note: maturase Location: 4174692-4174905 bp Feature: domain Description: GIIM Note: maturase Location: 41 74692-41 74905 bp Feature: gene Location: 4175649-4176089 bp Feature: gene Location: 4176347-4177003 bp Ori: BAU75507.1 Feature: domain Description: CytC553 Location: 4176467-4176776 bp Feature: domain Description: CytC553 Location: 41 76467-41 76776 bp Feature: domain Description: CytC553 Location: 4176782-4176998 bp Feature: domain Description: CytC553 Location: 41 76782-41 76998 bp Feature: gene Location: 4303850-4304776 bp Ori: BAU75625.1 Feature: domain Description: PleD Location: 4304276-4304762 bp Feature: domain Description: PleD Location: 4304276-4304762 bp Feature: gene Location: 4304876-4306240 bp Ori: BAU75626.1 Feature: domain Description: PRK10700 Location: 4304906-4305701 bp Feature: domain Description: PRK1 0700 Location: 4304906-4305701 bp Feature: gene Location: 4306517-4307884 bp Ori: BAU75627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4306850-4307465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4306850-4307465 bp Feature: domain Description: GIIM Note: maturase Location: 4307522-4307750 bp Feature: domain Description: GIIM Note: maturase Location: 4307522-4307750 bp Feature: gene Location: 4308307-4309101 bp Ori: BAU75628.1 Feature: domain Description: ScpB Location: 4308319-4308844 bp Feature: domain Description: ScpB Location: 430831 9-4308844 bp Feature: gene Location: 4309102-4309926 bp Ori: BAU75629.1 Feature: domain Description: ScpA Location: 4309225-4309921 bp Feature: domain Description: ScpA Location: 4309225-4309921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10060 (cyclic di-GMP phosphodiesterase), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388), LysR (COG0583), PqqL (COG0612), RVT_N (pfam13655), YkfC (COG3344), HNHc (smart00507)
PRK10416 (signal recognition particle-docking protein FtsY; Provisional), FimD (COG3188), HcaE (COG4638), FNR_iron_sulfur_binding_1 (cd06215), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), galactar-dH20 (TIGR03248), HPPR (cd12156), OprD (pfam03573), 3beta-17beta-HSD_like_SDR_c (cd05341), PA_degradation_oxidoreductase_like (cd06214)
SDR_c (cd05233), PRK07656 (long-chain-fatty-acid--CoA ligase; Validated), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), IS5 (COG3039), Toluene_X (pfam03349), RidA (COG0251), PDR_like (cd06185), PRK10702 (endonuclease III; Provisional), lipid_A_lpxH (TIGR01854)
PRK10791 (peptidylprolyl isomerase B), HNH (pfam01844), PRK05347 (glutaminyl-tRNA synthetase; Provisional), cysS (TIGR00435), PRK13876 (conjugal transfer coupling protein TraG; Provisional), AAA (TIGR00769), RVT-G2L4, PucR (pfam07905), PhyH (pfam05721), CytC553 (COG2863)
PleD (COG3706), PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), ScpB (COG1386), ScpA (COG1354)