myRT

myRT report for GCA_002355595.1_F._lacunae_YT21-2

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Seq: AP017422.1 Filimonas lacunae DNA, complete genome, strain: NBRC 104114 (7814405 bp)
Overview 1 RT 1: 1278586-1288839 bp 2 RT 2: 4584098-4594060 bp 3 RT 3: 5781422-5786947 bp 4 RT 4: 6992928-7001573 bp Neighborhood of RT #1 [1278586, 1288839] LRR_4 LRR_4 LRR_4 RocCOR COR TIR_2 PRK13342 COG4916 RVT-UG12 Crp Neighborhood of RT #2 [4584098, 4594065] RVT-GII GIIM SusD STN OMP_RagA_SusC Neighborhood of RT #3 [5781422, 5786947] MPP_MS158 KOG4691 RVT-Retrons Neighborhood of RT #4 [6992928, 7001575] tolB DAP2 RVT-GII GIIM rho asnC Feature: gene Location: 1278586-1282635 bp Ori: BAV05085.1 Feature: domain Description: LRR_4 Location: 1279903-1280026 bp Feature: domain Description: LRR_4 Location: 1 279903-1 280026 bp Feature: domain Description: LRR_4 Location: 1280041-1280158 bp Feature: domain Description: LRR_4 Location: 1 280041 -1 2801 58 bp Feature: domain Description: LRR_4 Location: 1280170-1280275 bp Feature: domain Description: LRR_4 Location: 1 2801 70-1 280275 bp Feature: domain Description: RocCOR Location: 1280446-1280992 bp Feature: domain Description: RocCOR Location: 1 280446-1 280992 bp Feature: domain Description: COR Location: 1281172-1281595 bp Feature: domain Description: COR Location: 1 281 1 72-1 281 595 bp Feature: domain Description: TIR_2 Location: 1282090-1282381 bp Feature: domain Description: TIR_2 Location: 1 282090-1 282381 bp Feature: gene Location: 1283866-1285380 bp Ori: BAV05086.1 Feature: domain Description: PRK13342 Location: 1283983-1284553 bp Feature: domain Description: PRK1 3342 Location: 1 283983-1 284553 bp Feature: domain Description: COG4916 Location: 1284589-1285333 bp Feature: domain Description: COG491 6 Location: 1 284589-1 285333 bp Feature: gene Location: 1285913-1287589 bp Ori: BAV05087.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1286285-1286720 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 286285-1 286720 bp Feature: gene Location: 1287957-1288601 bp Ori: BAV05088.1 Feature: domain Description: Crp Location: 1288002-1288560 bp Feature: domain Description: Crp Location: 1 288002-1 288560 bp Feature: gene Location: 1288645-1288839 bp Feature: gene Location: 4584098-4585657 bp Feature: gene Location: 4585731-4587263 bp Feature: gene Location: 4587611-4588687 bp Ori: BAV07727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4587833-4588493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4587833-4588493 bp Feature: domain Description: GIIM Note: maturase Location: 4588574-4588685 bp Feature: domain Description: GIIM Note: maturase Location: 4588574-4588685 bp Feature: gene Location: 4589225-4590718 bp Ori: BAV07728.1 Feature: domain Description: SusD Location: 4589375-4590584 bp Feature: domain Description: SusD Location: 4589375-4590584 bp Feature: gene Location: 4590739-4594065 bp Ori: BAV07729.1 Feature: domain Description: STN Location: 4590844-4590913 bp Feature: domain Description: STN Location: 4590844-459091 3 bp Feature: domain Description: OMP_RagA_SusC Location: 4591114-4594060 bp Feature: domain Description: OMP_RagA_SusC Location: 4591 1 1 4-4594060 bp Feature: gene Location: 5781422-5782552 bp Feature: gene Location: 5782659-5783426 bp Ori: BAV08680.1 Feature: domain Description: MPP_MS158 Location: 5782668-5783364 bp Feature: domain Description: MPP_MS1 58 Location: 5782668-5783364 bp Feature: gene Location: 5783430-5784953 bp Ori: BAV08681.1 Feature: domain Description: KOG4691 Location: 5783574-5783793 bp Feature: domain Description: KOG4691 Location: 5783574-5783793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5783979-5784591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5783979-5784591 bp Feature: gene Location: 5785006-5785134 bp Feature: gene Location: 5785283-5786947 bp Feature: gene Location: 6992928-6993569 bp Feature: gene Location: 6993647-6996076 bp Ori: BAV09670.1 Feature: domain Description: tolB Location: 6993965-6994073 bp Feature: domain Description: tolB Location: 6993965-6994073 bp Feature: domain Description: DAP2 Location: 6994082-6996065 bp Feature: domain Description: DAP2 Location: 6994082-6996065 bp Feature: gene Location: 6996177-6997580 bp Ori: BAV09671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6996513-6997131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699651 3-69971 31 bp Feature: domain Description: GIIM Note: maturase Location: 6997182-6997404 bp Feature: domain Description: GIIM Note: maturase Location: 69971 82-6997404 bp Feature: gene Location: 6998064-6999689 bp Ori: BAV09672.1 Feature: domain Description: rho Location: 6998244-6999684 bp Feature: domain Description: rho Location: 6998244-6999684 bp Feature: gene Location: 7000172-7001575 bp Ori: BAV09673.1 Feature: domain Description: asnC Location: 7000184-7001573 bp Feature: domain Description: asnC Location: 70001 84-7001 573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_4 (pfam12799), RocCOR (cd09914), COR (pfam16095), TIR_2 (pfam13676), PRK13342 (recombination factor protein RarA; Reviewed), COG4916 (Uncharacterized protein ), RVT-UG12, Crp (pfam00325), RVT-GII, GIIM (pfam08388)
SusD (NF033071), STN (smart00965), OMP_RagA_SusC (TIGR04056), MPP_MS158 (cd07404), KOG4691 (KOG4691, Uncharacterized conserved protein ), RVT-Retrons, tolB (PRK05137), DAP2 (COG1506), rho (TIGR00767), asnC (PRK03932)