myRT

myRT report for GCA_002356035.1_ASM235603v1

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Seq: AP017900.1 Nocardia seriolae DNA, complete genome, strain: UTF1 (8121733 bp)
Overview 1 RT 1: 1964508-1971496 bp 2 RT 2: 2204316-2212410 bp 3 RT 3: 4255276-4259677 bp 4 RT 4: 5088600-5092446 bp 5 RT 5: 6499607-6503539 bp 6 RT 6: 6514566-6521010 bp 7 RT 7: 6797748-6803841 bp 8 RT 8: 6904351-6909653 bp Neighborhood of RT #1 [1964508, 1971507] YdcF-like MngR RVT-GII GIIM CaiA ACAD Neighborhood of RT #2 [2204316, 2212478] SDR_c RVT-GII GIIM HTH_29 HTH_50 DDE_3 HTH_Tnp_1 Neighborhood of RT #3 [4255276, 4259805] InsE PHA02517 RVT-GII GIIM HTH_29 HTH_50 DDE_3 Neighborhood of RT #4 [5088600, 5092446] RVT-GII DDE_5 Neighborhood of RT #5 [6499607, 6503574] Tra5 YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Neighborhood of RT #6 [6514566, 6521111] DDE_5 RVT-GII Intron_maturas2 HNHc DUF4096 Abhydrolase_1 Neighborhood of RT #7 [6797748, 6803897] RVT-GII DDE_5 DDE_Tnp_1_4 Neighborhood of RT #8 [6904351, 6909653] RVT-GII GIIM Feature: gene Location: 1964508-1965176 bp Ori: BAW05008.1 Feature: domain Description: YdcF-like Location: 1964607-1964970 bp Feature: domain Description: YdcF-like Location: 1 964607-1 964970 bp Feature: gene Location: 1965188-1965952 bp Ori: BAW05009.1 Feature: domain Description: MngR Location: 1965197-1965932 bp Feature: domain Description: MngR Location: 1 9651 97-1 965932 bp Feature: gene Location: 1966868-1968355 bp Ori: BAW05010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967183-1967891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9671 83-1 967891 bp Feature: domain Description: GIIM Note: maturase Location: 1967966-1968197 bp Feature: domain Description: GIIM Note: maturase Location: 1 967966-1 9681 97 bp Feature: gene Location: 1968815-1970053 bp Ori: BAW05011.1 Feature: domain Description: CaiA Location: 1968833-1970039 bp Feature: domain Description: CaiA Location: 1 968833-1 970039 bp Feature: gene Location: 1970080-1971507 bp Ori: BAW05012.1 Feature: domain Description: ACAD Location: 1970428-1971496 bp Feature: domain Description: ACAD Location: 1 970428-1 971 496 bp Feature: gene Location: 2204316-2204996 bp Feature: gene Location: 2205381-2206151 bp Ori: BAW05231.1 Feature: domain Description: SDR_c Location: 2205408-2206134 bp Feature: domain Description: SDR_c Location: 2205408-22061 34 bp Feature: gene Location: 2207508-2208995 bp Ori: BAW05232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2207823-2208531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2207823-2208531 bp Feature: domain Description: GIIM Note: maturase Location: 2208606-2208837 bp Feature: domain Description: GIIM Note: maturase Location: 2208606-2208837 bp Feature: gene Location: 2209713-2210798 bp Ori: BAW05233.1 Feature: domain Description: HTH_29 Location: 2209821-2209995 bp Feature: domain Description: HTH_29 Location: 2209821 -2209995 bp Feature: domain Description: HTH_50 Location: 2210043-2210124 bp Feature: domain Description: HTH_50 Location: 221 0043-221 01 24 bp Feature: domain Description: DDE_3 Location: 2210232-2210670 bp Feature: domain Description: DDE_3 Location: 221 0232-221 0670 bp Feature: gene Location: 2212182-2212478 bp Ori: BAW05234.1 Feature: domain Description: HTH_Tnp_1 Location: 2212191-2212410 bp Feature: domain Description: HTH_Tnp_1 Location: 221 21 91 -221 241 0 bp Feature: gene Location: 4255276-4255599 bp Ori: BAW07157.1 Feature: domain Description: InsE Location: 4255279-4255585 bp Feature: domain Description: InsE Location: 4255279-4255585 bp Feature: gene Location: 4255599-4256525 bp Ori: BAW07158.1 Feature: domain Description: PHA02517 Location: 4255698-4256508 bp Feature: domain Description: PHA0251 7 Location: 4255698-4256508 bp Feature: gene Location: 4256599-4257984 bp Ori: BAW07159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4256812-4257520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425681 2-4257520 bp Feature: domain Description: GIIM Note: maturase Location: 4257595-4257826 bp Feature: domain Description: GIIM Note: maturase Location: 4257595-4257826 bp Feature: gene Location: 4258160-4258420 bp Feature: gene Location: 4258720-4259805 bp Ori: BAW07161.1 Feature: domain Description: HTH_29 Location: 4258828-4259002 bp Feature: domain Description: HTH_29 Location: 4258828-4259002 bp Feature: domain Description: HTH_50 Location: 4259050-4259131 bp Feature: domain Description: HTH_50 Location: 4259050-42591 31 bp Feature: domain Description: DDE_3 Location: 4259239-4259677 bp Feature: domain Description: DDE_3 Location: 4259239-4259677 bp Feature: gene Location: 5088600-5088827 bp Feature: gene Location: 5090011-5090217 bp Feature: gene Location: 5090728-5091030 bp Ori: BAW07977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5090752-5090902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5090752-5090902 bp Feature: gene Location: 5091042-5092175 bp Ori: BAW07978.1 Feature: domain Description: DDE_5 Location: 5091105-5091732 bp Feature: domain Description: DDE_5 Location: 5091 1 05-5091 732 bp Feature: gene Location: 5092309-5092446 bp Feature: gene Location: 6499607-6500374 bp Ori: BAW09317.1 Feature: domain Description: Tra5 Location: 6499613-6500021 bp Feature: domain Description: Tra5 Location: 649961 3-6500021 bp Feature: gene Location: 6500988-6501272 bp Ori: BAW09318.1 Feature: domain Description: YkfC Location: 6501051-6501210 bp Feature: domain Description: YkfC Location: 6501 051 -6501 21 0 bp Feature: gene Location: 6501269-6501829 bp Ori: BAW09319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501317-6501773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501 31 7-6501 773 bp Feature: gene Location: 6501839-6502156 bp Ori: BAW09320.1 Feature: domain Description: PHA02517 Location: 6501869-6502124 bp Feature: domain Description: PHA0251 7 Location: 6501 869-65021 24 bp Feature: gene Location: 6502375-6503574 bp Ori: BAW09321.1 Feature: domain Description: Tra8 Location: 6502414-6502675 bp Feature: domain Description: Tra8 Location: 650241 4-6502675 bp Feature: domain Description: Tra8 Location: 6502774-6503140 bp Feature: domain Description: Tra8 Location: 6502774-65031 40 bp Feature: domain Description: Tra8 Location: 6503206-6503539 bp Feature: domain Description: Tra8 Location: 6503206-6503539 bp Feature: gene Location: 6514566-6514703 bp Feature: gene Location: 6514715-6515848 bp Ori: BAW09334.1 Feature: domain Description: DDE_5 Location: 6514778-6515405 bp Feature: domain Description: DDE_5 Location: 651 4778-651 5405 bp Feature: gene Location: 6516153-6517937 bp Ori: BAW09335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6516414-6517212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 641 4-651 721 2 bp Feature: domain Description: Intron_maturas2 Location: 6517329-6517542 bp Feature: domain Description: Intron_maturas2 Location: 651 7329-651 7542 bp Feature: domain Description: HNHc Note: nucleases Location: 6517737-6517893 bp Feature: domain Description: HNHc Note: nucleases Location: 651 7737-651 7893 bp Feature: gene Location: 6518805-6519128 bp Ori: BAW09336.1 Feature: domain Description: DUF4096 Location: 6518811-6519027 bp Feature: domain Description: DUF4096 Location: 651 881 1 -651 9027 bp Feature: gene Location: 6520347-6521111 bp Ori: BAW09337.1 Feature: domain Description: Abhydrolase_1 Location: 6520476-6521010 bp Feature: domain Description: Abhydrolase_1 Location: 6520476-6521 01 0 bp Feature: gene Location: 6797748-6797927 bp Feature: gene Location: 6798006-6798401 bp Feature: gene Location: 6799021-6799662 bp Ori: BAW09587.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6799336-6799633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6799336-6799633 bp Feature: gene Location: 6801131-6802324 bp Ori: BAW09588.1 Feature: domain Description: DDE_5 Location: 6801200-6801818 bp Feature: domain Description: DDE_5 Location: 6801 200-6801 81 8 bp Feature: gene Location: 6802575-6803897 bp Ori: BAW09589.1 Feature: domain Description: DDE_Tnp_1_4 Location: 6802584-6803841 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 6802584-6803841 bp Feature: gene Location: 6904351-6904599 bp Feature: gene Location: 6904641-6905255 bp Feature: gene Location: 6905385-6906872 bp Ori: BAW09684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6905700-6906408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6905700-6906408 bp Feature: domain Description: GIIM Note: maturase Location: 6906483-6906714 bp Feature: domain Description: GIIM Note: maturase Location: 6906483-690671 4 bp Feature: gene Location: 6908595-6908915 bp Feature: gene Location: 6909519-6909653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF-like (cl00630), MngR (COG2188), RVT-GII, GIIM (pfam08388), CaiA (COG1960), ACAD (cl09933), SDR_c (cd05233), HTH_29 (pfam13551), HTH_50 (pfam18024), DDE_3 (pfam13358)
HTH_Tnp_1 (pfam01527), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_5 (pfam13546), Tra5 (COG2801), YkfC (COG3344), Tra8 (COG2826), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4096 (pfam13340)
Abhydrolase_1 (pfam00561), DDE_Tnp_1_4 (pfam13701)