myRT

myRT report for GCA_002356095.1_ASM235609v1

Download annotations/find similar RTs

Seq: AP015029.1 Pseudomonas putida DNA, complete genome, strain: KF715 (6583377 bp)
Overview 1 RT 1: 26633-32877 bp 2 RT 2: 96898-102379 bp 3 RT 3: 609607-615239 bp 4 RT 4: 806898-814749 bp 5 RT 5: 919936-924227 bp 6 RT 6: 1491298-1496298 bp 7 RT 7: 3780335-3784456 bp 8 RT 8: 3794858-3799851 bp 9 RT 9: 4033173-4039420 bp 10 RT 10: 4119099-4122500 bp 11 RT 11: 4193632-4197635 bp 12 RT 12: 4242330-4249103 bp 13 RT 13: 4691084-4696900 bp 14 RT 14: 4976006-4981381 bp 15 RT 15: 6228204-6236725 bp 16 RT 16: 6395863-6401064 bp 17 RT 17: 6406489-6412445 bp Neighborhood of RT #1 [26633, 32879] fmt def RVT_N RVT-GII YkfC HNH Smf SUA5 Neighborhood of RT #2 [96898, 102417] gltP RVT-GII GIIM SpmA SpmB COG3218 Neighborhood of RT #3 [609607, 615268] Nnt1 YbaY RVT_N RVT-GII GIIM HNH TIGR00244 ribD Neighborhood of RT #4 [806898, 814754] PRK10723 PRK10865 RVT-GII GIIM Ndh DUF3094 Neighborhood of RT #5 [919936, 924256] Tra8 RVT-GII GIIM IS5 PRK09906 Neighborhood of RT #6 [1491298, 1496378] PRK09183 COG4584 RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 Neighborhood of RT #7 [3780335, 3784473] RVT-GII GIIM DUF3077 Neighborhood of RT #8 [3794858, 3799851] DUF2514 V RVT-GII GIIM Neighborhood of RT #9 [4033173, 4039434] AhpC PRK06116 RVT-GII GIIM galU CytC Neighborhood of RT #10 [4119099, 4122500] DUF2514 lyz_endolysin_autolysin RVT-GII GIIM Neighborhood of RT #11 [4193632, 4197832] MvaT_DBD RVT-Retrons couple_hipB Neighborhood of RT #12 [4242330, 4249103] Tar RVT-GII GIIM Neighborhood of RT #13 [4691084, 4696917] AzgA Rhs_assc_core RVT-GII GIIM HiuH uraD_N-term-dom Neighborhood of RT #14 [4976006, 4981446] PcbC Tsx RVT-GII GIIM pbuX Neighborhood of RT #15 [6228204, 6236775] PilN PilM RVT_N RVT-GII YkfC HNH MrcA PRK07232 Neighborhood of RT #16 [6395863, 6401069] YigB RVT-GII GIIM AmtB PRK10665 Neighborhood of RT #17 [6406489, 6412462] PRK03562 antidote_HigA RVT-GII GIIM PRK14997 Feature: gene Location: 26633-27565 bp Ori: BAW20595.1 Feature: domain Description: fmt Location: 26636-27548 bp Feature: domain Description: fmt Location: 26636-27548 bp Feature: gene Location: 27626-28132 bp Ori: BAW20596.1 Feature: domain Description: def Location: 27629-28115 bp Feature: domain Description: def Location: 27629-281 1 5 bp Feature: gene Location: 28240-29946 bp Ori: BAW20597.1 Feature: domain Description: RVT_N Location: 28297-28540 bp Feature: domain Description: RVT_N Location: 28297-28540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28585-29218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28585-2921 8 bp Feature: domain Description: YkfC Location: 29419-29581 bp Feature: domain Description: YkfC Location: 2941 9-29581 bp Feature: domain Description: HNH Note: nucleases Location: 29758-29896 bp Feature: domain Description: HNH Note: nucleases Location: 29758-29896 bp Feature: gene Location: 31182-32279 bp Ori: BAW20598.1 Feature: domain Description: Smf Location: 31221-32271 bp Feature: domain Description: Smf Location: 31 221 -32271 bp Feature: gene Location: 32322-32879 bp Ori: BAW20599.1 Feature: domain Description: SUA5 Location: 32340-32877 bp Feature: domain Description: SUA5 Location: 32340-32877 bp Feature: gene Location: 96898-97200 bp Feature: gene Location: 97085-98413 bp Ori: BAW20669.1 Feature: domain Description: gltP Location: 97088-98381 bp Feature: domain Description: gltP Location: 97088-98381 bp Feature: gene Location: 98988-100313 bp Ori: BAW20670.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99249-99864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99249-99864 bp Feature: domain Description: GIIM Note: maturase Location: 99921-100146 bp Feature: domain Description: GIIM Note: maturase Location: 99921 -1 001 46 bp Feature: gene Location: 100571-101800 bp Ori: BAW20671.1 Feature: domain Description: SpmA Location: 100574-101210 bp Feature: domain Description: SpmA Location: 1 00574-1 01 21 0 bp Feature: domain Description: SpmB Location: 101315-101795 bp Feature: domain Description: SpmB Location: 1 01 31 5-1 01 795 bp Feature: gene Location: 101782-102417 bp Ori: BAW20672.1 Feature: domain Description: COG3218 Location: 101800-102379 bp Feature: domain Description: COG321 8 Location: 1 01 800-1 02379 bp Feature: gene Location: 609607-610266 bp Ori: BAW21111.1 Feature: domain Description: Nnt1 Location: 609679-610075 bp Feature: domain Description: Nnt1 Location: 609679-61 0075 bp Feature: gene Location: 610267-610719 bp Ori: BAW21112.1 Feature: domain Description: YbaY Location: 610294-610693 bp Feature: domain Description: YbaY Location: 61 0294-61 0693 bp Feature: gene Location: 611872-613578 bp Ori: BAW21113.1 Feature: domain Description: RVT_N Location: 611929-612166 bp Feature: domain Description: RVT_N Location: 61 1 929-61 21 66 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612217-612853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 221 7-61 2853 bp Feature: domain Description: GIIM Note: maturase Location: 612904-613138 bp Feature: domain Description: GIIM Note: maturase Location: 61 2904-61 31 38 bp Feature: domain Description: HNH Note: nucleases Location: 613390-613528 bp Feature: domain Description: HNH Note: nucleases Location: 61 3390-61 3528 bp Feature: gene Location: 613671-614135 bp Ori: BAW21114.1 Feature: domain Description: TIGR00244 Location: 613674-614112 bp Feature: domain Description: TIGR00244 Location: 61 3674-61 41 1 2 bp Feature: gene Location: 614138-615268 bp Ori: BAW21115.1 Feature: domain Description: ribD Location: 614165-615239 bp Feature: domain Description: ribD Location: 61 41 65-61 5239 bp Feature: gene Location: 806898-807638 bp Ori: BAW21284.1 Feature: domain Description: PRK10723 Location: 806916-807627 bp Feature: domain Description: PRK1 0723 Location: 80691 6-807627 bp Feature: gene Location: 807885-810449 bp Ori: BAW21285.1 Feature: domain Description: PRK10865 Location: 807888-810441 bp Feature: domain Description: PRK1 0865 Location: 807888-81 0441 bp Feature: gene Location: 810958-812307 bp Ori: BAW21286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811240-811855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 1 240-81 1 855 bp Feature: domain Description: GIIM Note: maturase Location: 811912-812125 bp Feature: domain Description: GIIM Note: maturase Location: 81 1 91 2-81 21 25 bp Feature: gene Location: 813201-814496 bp Ori: BAW21287.1 Feature: domain Description: Ndh Location: 813204-814449 bp Feature: domain Description: Ndh Location: 81 3204-81 4449 bp Feature: gene Location: 814581-814754 bp Ori: BAW21288.1 Feature: domain Description: DUF3094 Location: 814587-814749 bp Feature: domain Description: DUF3094 Location: 81 4587-81 4749 bp Feature: gene Location: 919936-920265 bp Feature: gene Location: 920428-921447 bp Ori: BAW21387.1 Feature: domain Description: Tra8 Location: 920431-921415 bp Feature: domain Description: Tra8 Location: 920431 -921 41 5 bp Feature: gene Location: 921585-922673 bp Ori: BAW21388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921633-922290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 633-922290 bp Feature: domain Description: GIIM Note: maturase Location: 922368-922590 bp Feature: domain Description: GIIM Note: maturase Location: 922368-922590 bp Feature: gene Location: 922666-923217 bp Ori: BAW21389.1 Feature: domain Description: IS5 Location: 922750-923185 bp Feature: domain Description: IS5 Location: 922750-9231 85 bp Feature: gene Location: 923363-924256 bp Ori: BAW21390.1 Feature: domain Description: PRK09906 Location: 923366-924227 bp Feature: domain Description: PRK09906 Location: 923366-924227 bp Feature: gene Location: 1491298-1491912 bp Ori: BAW21904.1 Feature: domain Description: PRK09183 Location: 1491301-1491886 bp Feature: domain Description: PRK091 83 Location: 1 491 301 -1 491 886 bp Feature: gene Location: 1491909-1492904 bp Ori: BAW21905.1 Feature: domain Description: COG4584 Location: 1491912-1492749 bp Feature: domain Description: COG4584 Location: 1 491 91 2-1 492749 bp Feature: gene Location: 1493520-1494806 bp Ori: BAW21906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493724-1494414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 493724-1 49441 4 bp Feature: gene Location: 1495456-1495737 bp Ori: BAW21907.1 Feature: domain Description: TnpB_IS66 Location: 1495486-1495654 bp Feature: domain Description: TnpB_IS66 Location: 1 495486-1 495654 bp Feature: gene Location: 1495836-1496378 bp Ori: BAW21908.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1495920-1496145 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 495920-1 4961 45 bp Feature: domain Description: zf-IS66 Location: 1496172-1496298 bp Feature: domain Description: zf-IS66 Location: 1 4961 72-1 496298 bp Feature: gene Location: 3780335-3781051 bp Feature: gene Location: 3781110-3781445 bp Feature: gene Location: 3782039-3783388 bp Ori: BAW23931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782321-3782936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782321 -3782936 bp Feature: domain Description: GIIM Note: maturase Location: 3782993-3783206 bp Feature: domain Description: GIIM Note: maturase Location: 3782993-3783206 bp Feature: gene Location: 3783806-3784048 bp Feature: gene Location: 3784210-3784473 bp Ori: BAW23933.1 Feature: domain Description: DUF3077 Location: 3784237-3784456 bp Feature: domain Description: DUF3077 Location: 3784237-3784456 bp Feature: gene Location: 3794858-3795292 bp Ori: BAW23943.1 Feature: domain Description: DUF2514 Location: 3794924-3795263 bp Feature: domain Description: DUF251 4 Location: 3794924-3795263 bp Feature: gene Location: 3795370-3795807 bp Ori: BAW23944.1 Feature: domain Description: V Location: 3795376-3795802 bp Feature: domain Description: V Location: 3795376-3795802 bp Feature: gene Location: 3795897-3797246 bp Ori: BAW23945.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3796179-3796794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37961 79-3796794 bp Feature: domain Description: GIIM Note: maturase Location: 3796851-3797064 bp Feature: domain Description: GIIM Note: maturase Location: 3796851 -3797064 bp Feature: gene Location: 3797816-3799024 bp Feature: gene Location: 3799075-3799851 bp Feature: gene Location: 4033173-4033736 bp Ori: BAW24192.1 Feature: domain Description: AhpC Location: 4033176-4033734 bp Feature: domain Description: AhpC Location: 40331 76-4033734 bp Feature: gene Location: 4034003-4035358 bp Ori: BAW24193.1 Feature: domain Description: PRK06116 Location: 4034006-4035344 bp Feature: domain Description: PRK061 1 6 Location: 4034006-4035344 bp Feature: gene Location: 4035481-4036806 bp Ori: BAW24194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035742-4036357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035742-4036357 bp Feature: domain Description: GIIM Note: maturase Location: 4036414-4036639 bp Feature: domain Description: GIIM Note: maturase Location: 403641 4-4036639 bp Feature: gene Location: 4037378-4038217 bp Ori: BAW24195.1 Feature: domain Description: galU Location: 4037387-4038170 bp Feature: domain Description: galU Location: 4037387-40381 70 bp Feature: gene Location: 4038517-4039434 bp Ori: BAW24196.1 Feature: domain Description: CytC Location: 4038634-4039420 bp Feature: domain Description: CytC Location: 4038634-4039420 bp Feature: gene Location: 4119099-4119596 bp Ori: BAW24287.1 Feature: domain Description: DUF2514 Location: 4119111-4119588 bp Feature: domain Description: DUF251 4 Location: 41 1 91 1 1 -41 1 9588 bp Feature: gene Location: 4119593-4120024 bp Ori: BAW24288.1 Feature: domain Description: lyz_endolysin_autolysin Location: 4119614-4120013 bp Feature: domain Description: lyz_endolysin_autolysin Location: 41 1 961 4-41 2001 3 bp Feature: gene Location: 4120115-4121464 bp Ori: BAW24289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120397-4121012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 20397-41 21 01 2 bp Feature: domain Description: GIIM Note: maturase Location: 4121069-4121282 bp Feature: domain Description: GIIM Note: maturase Location: 41 21 069-41 21 282 bp Feature: gene Location: 4121966-4122136 bp Feature: gene Location: 4122120-4122500 bp Feature: gene Location: 4193632-4194000 bp Ori: BAW24376.1 Feature: domain Description: MvaT_DBD Location: 4193872-4193992 bp Feature: domain Description: MvaT_DBD Location: 41 93872-41 93992 bp Feature: gene Location: 4194118-4194723 bp Feature: gene Location: 4194894-4196009 bp Ori: BAW24378.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4195029-4195599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 95029-41 95599 bp Feature: gene Location: 4197026-4197271 bp Feature: gene Location: 4197464-4197832 bp Ori: BAW24380.1 Feature: domain Description: couple_hipB Location: 4197485-4197635 bp Feature: domain Description: couple_hipB Location: 41 97485-41 97635 bp Feature: gene Location: 4242330-4243640 bp Ori: BAW24429.1 Feature: domain Description: Tar Location: 4242492-4243638 bp Feature: domain Description: Tar Location: 4242492-4243638 bp Feature: gene Location: 4245156-4245725 bp Feature: gene Location: 4245950-4247299 bp Ori: BAW24431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4246232-4246847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4246232-4246847 bp Feature: domain Description: GIIM Note: maturase Location: 4246904-4247117 bp Feature: domain Description: GIIM Note: maturase Location: 4246904-42471 1 7 bp Feature: gene Location: 4248424-4248612 bp Feature: gene Location: 4248639-4249103 bp Feature: gene Location: 4691084-4692433 bp Ori: BAW24801.1 Feature: domain Description: AzgA Location: 4691141-4692428 bp Feature: domain Description: AzgA Location: 4691 1 41 -4692428 bp Feature: gene Location: 4692476-4693180 bp Ori: BAW24802.1 Feature: domain Description: Rhs_assc_core Location: 4692500-4692728 bp Feature: domain Description: Rhs_assc_core Location: 4692500-4692728 bp Feature: gene Location: 4693370-4694719 bp Ori: BAW24803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693652-4694267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693652-4694267 bp Feature: domain Description: GIIM Note: maturase Location: 4694324-4694537 bp Feature: domain Description: GIIM Note: maturase Location: 4694324-4694537 bp Feature: gene Location: 4695238-4695591 bp Ori: BAW24804.1 Feature: domain Description: HiuH Location: 4695241-4695589 bp Feature: domain Description: HiuH Location: 4695241 -4695589 bp Feature: gene Location: 4695991-4696917 bp Ori: BAW24805.1 Feature: domain Description: uraD_N-term-dom Location: 4696006-4696900 bp Feature: domain Description: uraD_N-term-dom Location: 4696006-4696900 bp Feature: gene Location: 4976006-4976995 bp Ori: BAW25064.1 Feature: domain Description: PcbC Location: 4976039-4976897 bp Feature: domain Description: PcbC Location: 4976039-4976897 bp Feature: gene Location: 4977091-4977891 bp Ori: BAW25065.1 Feature: domain Description: Tsx Location: 4977178-4977889 bp Feature: domain Description: Tsx Location: 49771 78-4977889 bp Feature: gene Location: 4978197-4979522 bp Ori: BAW25066.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4978458-4979073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4978458-4979073 bp Feature: domain Description: GIIM Note: maturase Location: 4979130-4979355 bp Feature: domain Description: GIIM Note: maturase Location: 49791 30-4979355 bp Feature: gene Location: 4979935-4980114 bp Feature: gene Location: 4980178-4981446 bp Ori: BAW25068.1 Feature: domain Description: pbuX Location: 4980181-4981381 bp Feature: domain Description: pbuX Location: 49801 81 -4981 381 bp Feature: gene Location: 6228204-6228740 bp Ori: BAW26174.1 Feature: domain Description: PilN Location: 6228207-6228687 bp Feature: domain Description: PilN Location: 6228207-6228687 bp Feature: gene Location: 6228737-6229618 bp Ori: BAW26175.1 Feature: domain Description: PilM Location: 6228740-6229274 bp Feature: domain Description: PilM Location: 6228740-6229274 bp Feature: gene Location: 6230819-6232525 bp Ori: BAW26176.1 Feature: domain Description: RVT_N Location: 6230876-6231119 bp Feature: domain Description: RVT_N Location: 6230876-6231 1 1 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6231164-6231800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6231 1 64-6231 800 bp Feature: domain Description: YkfC Location: 6231998-6232151 bp Feature: domain Description: YkfC Location: 6231 998-62321 51 bp Feature: domain Description: HNH Note: nucleases Location: 6232337-6232475 bp Feature: domain Description: HNH Note: nucleases Location: 6232337-6232475 bp Feature: gene Location: 6232720-6235107 bp Ori: BAW26177.1 Feature: domain Description: MrcA Location: 6232729-6235033 bp Feature: domain Description: MrcA Location: 6232729-6235033 bp Feature: gene Location: 6235507-6236775 bp Ori: BAW26178.1 Feature: domain Description: PRK07232 Location: 6235516-6236725 bp Feature: domain Description: PRK07232 Location: 623551 6-6236725 bp Feature: gene Location: 6395863-6396558 bp Ori: BAW26333.1 Feature: domain Description: YigB Location: 6395866-6396550 bp Feature: domain Description: YigB Location: 6395866-6396550 bp Feature: gene Location: 6396716-6397045 bp Feature: gene Location: 6397504-6398853 bp Ori: BAW26335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397786-6398401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397786-6398401 bp Feature: domain Description: GIIM Note: maturase Location: 6398458-6398671 bp Feature: domain Description: GIIM Note: maturase Location: 6398458-6398671 bp Feature: gene Location: 6399353-6400684 bp Ori: BAW26336.1 Feature: domain Description: AmtB Location: 6399446-6400679 bp Feature: domain Description: AmtB Location: 6399446-6400679 bp Feature: gene Location: 6400731-6401069 bp Ori: BAW26337.1 Feature: domain Description: PRK10665 Location: 6400734-6401064 bp Feature: domain Description: PRK1 0665 Location: 6400734-6401 064 bp Feature: gene Location: 6406489-6408276 bp Ori: BAW26343.1 Feature: domain Description: PRK03562 Location: 6406507-6408268 bp Feature: domain Description: PRK03562 Location: 6406507-6408268 bp Feature: gene Location: 6408281-6408565 bp Ori: BAW26344.1 Feature: domain Description: antidote_HigA Location: 6408299-6408527 bp Feature: domain Description: antidote_HigA Location: 6408299-6408527 bp Feature: gene Location: 6409360-6410685 bp Ori: BAW26345.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6409621-6410236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6409621 -641 0236 bp Feature: domain Description: GIIM Note: maturase Location: 6410293-6410518 bp Feature: domain Description: GIIM Note: maturase Location: 641 0293-641 051 8 bp Feature: gene Location: 6411270-6411410 bp Feature: gene Location: 6411551-6412462 bp Ori: BAW26347.1 Feature: domain Description: PRK14997 Location: 6411557-6412445 bp Feature: domain Description: PRK1 4997 Location: 641 1 557-641 2445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), Smf (COG0758), SUA5 (pfam03481), gltP (PRK11283), GIIM (pfam08388)
SpmA (COG2715), SpmB (COG0700), COG3218 (ABC-type uncharacterized transport system, auxiliary component ), Nnt1 (COG3897), YbaY (COG3126), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786), PRK10723 (polyphenol oxidase), PRK10865 (ATP-dependent chaperone ClpB), Ndh (COG1252)
DUF3094 (pfam11293), Tra8 (COG2826), IS5 (COG3039), PRK09906 (DNA-binding transcriptional regulator HcaR; Provisional), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DUF3077 (pfam11275)
DUF2514 (pfam10721), V (PHA02564), AhpC (TIGR03137), PRK06116 (glutathione reductase; Validated), galU (TIGR01099), CytC (COG3258), lyz_endolysin_autolysin (cd00737), MvaT_DBD (cl40688), RVT-Retrons, couple_hipB (TIGR03070)
Tar (COG0840), AzgA (COG2252), Rhs_assc_core (TIGR03696), HiuH (COG2351), uraD_N-term-dom (TIGR03212), PcbC (COG3491), Tsx (COG3248), pbuX (TIGR03173), PilN (pfam05137), PilM (pfam07419)
MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), YigB (COG1011), AmtB (COG0004), PRK10665 (P-II family nitrogen regulator), PRK03562 (glutathione-regulated potassium-efflux system protein KefC; Provisional), antidote_HigA (TIGR02607), PRK14997 (LysR family transcriptional regulator; Provisional)

Seq: AP015030.1 Pseudomonas putida plasmid pKF715A DNA, complete genome, strain: KF715 (483376 bp)
Overview 1 RT 1: 33947-39513 bp 2 RT 2: 185651-190996 bp 3 RT 3: 330441-336805 bp 4 RT 4: 469883-475345 bp Neighborhood of RT #1 [33947, 39533] IS5 IS5 RVT_N RVT-GII GIIM InsE PHA02517 Neighborhood of RT #2 [185651, 190996] RVT-GII GIIM Neighborhood of RT #3 [330441, 337521] RVT-GII GIIM SPFH_prohibitin RecB Neighborhood of RT #4 [469883, 475410] PcbC Tsx RVT-GII GIIM pbuX Feature: gene Location: 33947-34945 bp Ori: BAW26539.1 Feature: domain Description: IS5 Location: 34166-34934 bp Feature: domain Description: IS5 Location: 34166-34934 bp Feature: gene Location: 35291-35731 bp Ori: BAW26540.1 Feature: domain Description: IS5 Location: 35297-35705 bp Feature: domain Description: IS5 Location: 352 97-35705 bp Feature: gene Location: 35822-37327 bp Ori: BAW26541.1 Feature: domain Description: RVT_N Location: 35903-36128 bp Feature: domain Description: RVT_N Location: 35903-3612 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36179-36821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36179-3682 1 bp Feature: domain Description: GIIM Note: maturase Location: 36872-37106 bp Feature: domain Description: GIIM Note: maturase Location: 36872 -37106 bp Feature: gene Location: 38358-38666 bp Ori: BAW26542.1 Feature: domain Description: InsE Location: 38373-38658 bp Feature: domain Description: InsE Location: 38373-38658 bp Feature: gene Location: 38823-39533 bp Ori: BAW26543.1 Feature: domain Description: PHA02517 Location: 38829-39513 bp Feature: domain Description: PHA02 517 Location: 3882 9-39513 bp Feature: gene Location: 185651-186430 bp Feature: gene Location: 186717-187028 bp Feature: gene Location: 187624-188823 bp Ori: BAW26786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187789-188401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187789-188401 bp Feature: domain Description: GIIM Note: maturase Location: 188461-188665 bp Feature: domain Description: GIIM Note: maturase Location: 188461-188665 bp Feature: gene Location: 188860-189033 bp Feature: gene Location: 189989-190996 bp Feature: gene Location: 330441-330647 bp Feature: gene Location: 330647-331177 bp Feature: gene Location: 331253-332578 bp Ori: BAW26967.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331514-332129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331514-332 12 9 bp Feature: domain Description: GIIM Note: maturase Location: 332186-332411 bp Feature: domain Description: GIIM Note: maturase Location: 332 186-332 411 bp Feature: gene Location: 333147-334016 bp Ori: BAW26968.1 Feature: domain Description: SPFH_prohibitin Location: 333237-333816 bp Feature: domain Description: SPFH_prohibitin Location: 3332 37-333816 bp Feature: gene Location: 334204-337521 bp Ori: BAW26969.1 Feature: domain Description: RecB Location: 334306-336805 bp Feature: domain Description: RecB Location: 334306-336805 bp Feature: gene Location: 469883-470872 bp Ori: BAW27095.1 Feature: domain Description: PcbC Location: 469916-470774 bp Feature: domain Description: PcbC Location: 469916-470774 bp Feature: gene Location: 470968-471768 bp Ori: BAW27096.1 Feature: domain Description: Tsx Location: 471055-471766 bp Feature: domain Description: Tsx Location: 471055-471766 bp Feature: gene Location: 472074-473399 bp Ori: BAW27097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472335-472950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 335-472 950 bp Feature: domain Description: GIIM Note: maturase Location: 473007-473232 bp Feature: domain Description: GIIM Note: maturase Location: 473007-4732 32 bp Feature: gene Location: 473812-473991 bp Feature: gene Location: 474055-475410 bp Ori: BAW27099.1 Feature: domain Description: pbuX Location: 474127-475345 bp Feature: domain Description: pbuX Location: 47412 7-475345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), SPFH_prohibitin (cd03401), RecB (COG4998), PcbC (COG3491), Tsx (COG3248)
pbuX (TIGR03173)

Seq: AP015031.1 Pseudomonas putida plasmid pKF715B DNA, complete genome, strain: KF715 (276165 bp)
Overview 1 RT 1: 15781-22104 bp 2 RT 2: 157735-161540 bp 3 RT 3: 217069-224980 bp 4 RT 4: 228673-232952 bp Neighborhood of RT #1 [15781, 22104] RVT-GII GIIM Rep_3 Neighborhood of RT #2 [157735, 161540] RVT-GII GIIM Neighborhood of RT #3 [217069, 224985] HTH_XRE HTH_XRE RVT-GII GIIM parB_part RVT-GII GIIM S2P-M50 S2P-M50 Neighborhood of RT #4 [228673, 233032] RVT-GII GIIM N6_Mtase Feature: gene Location: 15781-16248 bp Feature: gene Location: 17199-18089 bp Ori: BAW27118.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17208-17637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17208-1763 7 bp Feature: domain Description: GIIM Note: maturase Location: 17694-17907 bp Feature: domain Description: GIIM Note: maturase Location: 17694-17907 bp Feature: gene Location: 19884-21167 bp Ori: BAW27119.1 Feature: domain Description: Rep_3 Location: 19902-20529 bp Feature: domain Description: Rep_3 Location: 19902-20529 bp Feature: gene Location: 21175-22104 bp Feature: gene Location: 157735-158007 bp Feature: gene Location: 158269-158568 bp Feature: gene Location: 159068-160417 bp Ori: BAW27303.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159350-159965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1593 50-159965 bp Feature: domain Description: GIIM Note: maturase Location: 160022-160235 bp Feature: domain Description: GIIM Note: maturase Location: 160022-16023 5 bp Feature: gene Location: 160788-161192 bp Feature: gene Location: 161328-161540 bp Feature: gene Location: 217069-217716 bp Ori: BAW27371.1 Feature: domain Description: HTH_XRE Location: 217351-217459 bp Feature: domain Description: HTH_XRE Location: 2173 51-217459 bp Feature: domain Description: HTH_XRE Location: 217534-217642 bp Feature: domain Description: HTH_XRE Location: 21753 4-217642 bp Feature: gene Location: 217764-218078 bp Feature: gene Location: 218154-219503 bp Ori: BAW27373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218436-219051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21843 6-219051 bp Feature: domain Description: GIIM Note: maturase Location: 219108-219321 bp Feature: domain Description: GIIM Note: maturase Location: 219108-2193 21 bp Feature: gene Location: 220006-220995 bp Ori: BAW27374.1 Feature: domain Description: parB_part Location: 220198-220645 bp Feature: domain Description: parB_part Location: 220198-220645 bp Feature: gene Location: 221170-221484 bp Feature: gene Location: 221910-222119 bp Feature: gene Location: 222128-223477 bp Ori: BAW27377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222410-223025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222410-223 025 bp Feature: domain Description: GIIM Note: maturase Location: 223082-223295 bp Feature: domain Description: GIIM Note: maturase Location: 223 082-223 295 bp Feature: gene Location: 223973-224383 bp Feature: gene Location: 224443-224985 bp Ori: BAW27379.1 Feature: domain Description: S2P-M50 Location: 224500-224797 bp Feature: domain Description: S2P-M50 Location: 224500-224797 bp Feature: domain Description: S2P-M50 Location: 224812-224980 bp Feature: domain Description: S2P-M50 Location: 224812-224980 bp Feature: gene Location: 228673-229062 bp Feature: gene Location: 229076-229375 bp Feature: gene Location: 229869-231218 bp Ori: BAW27385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230151-230766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 0151-23 0766 bp Feature: domain Description: GIIM Note: maturase Location: 230823-231036 bp Feature: domain Description: GIIM Note: maturase Location: 23 0823 -23 103 6 bp Feature: gene Location: 231359-232222 bp Feature: gene Location: 232337-233032 bp Ori: BAW27387.1 Feature: domain Description: N6_Mtase Location: 232568-232952 bp Feature: domain Description: N6_Mtase Location: 23 2568-23 2952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rep_3 (pfam01051), HTH_XRE (smart00530), parB_part (TIGR00180), S2P-M50 (cl10020), N6_Mtase (pfam02384)