myRT

myRT report for GCA_002368175.1_ASM236817v1

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Seq: AP018173.1 Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome (222568 bp)
Overview 1 RT 1: 112914-122886 bp Neighborhood of RT #1 [112914, 122906] TniQ RVT-GII Intron_maturas2 HNHc RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII AAA_22 DUF4255 Feature: gene Location: 112914-113726 bp Ori: BAY14123.1 Feature: domain Description: TniQ Location: 113004-113448 bp Feature: domain Description: TniQ Location: 1 1 3004-1 1 3448 bp Feature: gene Location: 113716-114024 bp Feature: gene Location: 114215-116137 bp Ori: BAY14125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114599-115394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4599-1 1 5394 bp Feature: domain Description: Intron_maturas2 Location: 115490-115733 bp Feature: domain Description: Intron_maturas2 Location: 1 1 5490-1 1 5733 bp Feature: domain Description: HNHc Note: nucleases Location: 115892-116081 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 5892-1 1 6081 bp Feature: gene Location: 116524-117789 bp Ori: BAY14126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116530-116866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6530-1 1 6866 bp Feature: domain Description: GIIM Note: maturase Location: 117106-117340 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 71 06-1 1 7340 bp Feature: domain Description: McrA Location: 117433-117706 bp Feature: domain Description: McrA Location: 1 1 7433-1 1 7706 bp Feature: gene Location: 117955-119739 bp Ori: BAY14127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118216-119011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 821 6-1 1 901 1 bp Feature: domain Description: Intron_maturas2 Location: 119113-119353 bp Feature: domain Description: Intron_maturas2 Location: 1 1 91 1 3-1 1 9353 bp Feature: domain Description: HNHc Note: nucleases Location: 119536-119695 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 9536-1 1 9695 bp Feature: gene Location: 120270-120839 bp Ori: BAY14128.1 Feature: domain Description: RVT_N Location: 120306-120552 bp Feature: domain Description: RVT_N Location: 1 20306-1 20552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120594-120825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20594-1 20825 bp Feature: gene Location: 121549-121938 bp Ori: BAY14129.1 Feature: domain Description: AAA_22 Location: 121555-121735 bp Feature: domain Description: AAA_22 Location: 1 21 555-1 21 735 bp Feature: gene Location: 122328-122906 bp Ori: BAY14130.1 Feature: domain Description: DUF4255 Location: 122340-122886 bp Feature: domain Description: DUF4255 Location: 1 22340-1 22886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), AAA_22 (pfam13401), DUF4255 (pfam14065)

Seq: AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome (8656060 bp)
Overview 1 RT 1: 2275152-2280793 bp 2 RT 2: 4852537-4861549 bp Neighborhood of RT #1 [2275152, 2283429] AbiEii RVT-Retrons SWIM WGR_DNA_ligase HEAT_2 Neighborhood of RT #2 [4852537, 4861549] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG2 COG0610 Feature: gene Location: 2275152-2275562 bp Feature: gene Location: 2275644-2276597 bp Ori: BAY08754.1 Feature: domain Description: AbiEii Location: 2275983-2276346 bp Feature: domain Description: AbiEii Location: 2 2 75983-2 2 76346 bp Feature: gene Location: 2276666-2278075 bp Ori: BAY08755.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2277209-2277827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 772 09-2 2 7782 7 bp Feature: gene Location: 2278530-2280170 bp Ori: BAY08756.1 Feature: domain Description: SWIM Location: 2280051-2280141 bp Feature: domain Description: SWIM Location: 2 2 80051-2 2 80141 bp Feature: gene Location: 2280229-2283429 bp Ori: BAY08757.1 Feature: domain Description: WGR_DNA_ligase Location: 2280244-2280466 bp Feature: domain Description: WGR_DNA_ligase Location: 2 2 802 44-2 2 80466 bp Feature: domain Description: HEAT_2 Location: 2280562-2280793 bp Feature: domain Description: HEAT_2 Location: 2 2 80562 -2 2 80793 bp Feature: gene Location: 4852537-4854132 bp Ori: BAY10860.1 Gene: hsdM-1 Feature: domain Description: HsdM Location: 4852600-4854109 bp Feature: domain Description: HsdM Location: 4852 600-4854109 bp Feature: gene Location: 4854122-4855462 bp Ori: BAY10861.1 Gene: hsdS-1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4854152-4854746 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 4854152 -4854746 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4854875-4855421 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 4854875-485542 1 bp Feature: gene Location: 4855501-4856829 bp Ori: BAY10862.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4855699-4856521 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4855699-485652 1 bp Feature: gene Location: 4857216-4860350 bp Ori: BAY10863.1 Feature: domain Description: COG0610 Location: 4857234-4860258 bp Feature: domain Description: COG0610 Location: 48572 34-48602 58 bp Feature: gene Location: 4860662-4861549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-Retrons, SWIM (pfam04434), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )