myRT

myRT report for GCA_002368255.1_ASM236825v1

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Seq: AP018204.1 Leptolyngbya boryana NIES-2135 plasmid plasmid1 DNA, complete genome (411362 bp)
Overview 1 RT 1: 30040-47052 bp Neighborhood of RT #1 [30040, 47060] InsB INT_Rci_Hp1_C RVT_N RVT-GII RVT_N RVT-GII RVT-GII GIIM HNHc RVT-GII GIIM McrA GIIM HNH Uma2 RVT_N RVT-GII GIIM HNH AraC_N AraC FrsA Feature: gene Location: 30040-30342 bp Ori: BAY59162.1 Feature: domain Description: InsB Location: 30046-30301 bp Feature: domain Description: InsB Location: 30046-30301 bp Feature: gene Location: 30521-31174 bp Ori: BAY59163.1 Feature: domain Description: INT_Rci_Hp1_C Location: 30722-31082 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 30722-31 082 bp Feature: gene Location: 31945-32448 bp Ori: BAY59164.1 Feature: domain Description: RVT_N Location: 31999-32245 bp Feature: domain Description: RVT_N Location: 31 999-32245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32293-32431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32293-32431 bp Feature: gene Location: 32715-33017 bp Feature: gene Location: 33050-33775 bp Ori: BAY59166.1 Feature: domain Description: RVT_N Location: 33086-33332 bp Feature: domain Description: RVT_N Location: 33086-33332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33374-33749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33374-33749 bp Feature: gene Location: 34358-36034 bp Ori: BAY59167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34640-35324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34640-35324 bp Feature: domain Description: GIIM Note: maturase Location: 35393-35597 bp Feature: domain Description: GIIM Note: maturase Location: 35393-35597 bp Feature: domain Description: HNHc Note: nucleases Location: 35846-35996 bp Feature: domain Description: HNHc Note: nucleases Location: 35846-35996 bp Feature: gene Location: 36083-37228 bp Ori: BAY59168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36137-36446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 37-36446 bp Feature: domain Description: GIIM Note: maturase Location: 36545-36779 bp Feature: domain Description: GIIM Note: maturase Location: 36545-36779 bp Feature: domain Description: McrA Location: 36833-37145 bp Feature: domain Description: McrA Location: 36833-371 45 bp Feature: gene Location: 37778-38557 bp Ori: BAY59169.1 Feature: domain Description: GIIM Note: maturase Location: 37934-38156 bp Feature: domain Description: GIIM Note: maturase Location: 37934-381 56 bp Feature: domain Description: HNH Note: nucleases Location: 38408-38543 bp Feature: domain Description: HNH Note: nucleases Location: 38408-38543 bp Feature: gene Location: 38944-39708 bp Feature: gene Location: 40257-40844 bp Ori: BAY59172.1 Feature: domain Description: Uma2 Location: 40293-40818 bp Feature: domain Description: Uma2 Location: 40293-4081 8 bp Feature: gene Location: 41620-41760 bp Feature: gene Location: 42230-43945 bp Ori: BAY59174.1 Feature: domain Description: RVT_N Location: 42284-42530 bp Feature: domain Description: RVT_N Location: 42284-42530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42578-43256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42578-43256 bp Feature: domain Description: GIIM Note: maturase Location: 43322-43544 bp Feature: domain Description: GIIM Note: maturase Location: 43322-43544 bp Feature: domain Description: HNH Note: nucleases Location: 43796-43931 bp Feature: domain Description: HNH Note: nucleases Location: 43796-43931 bp Feature: gene Location: 44627-45610 bp Ori: BAY59175.1 Feature: domain Description: AraC_N Location: 44780-45230 bp Feature: domain Description: AraC_N Location: 44780-45230 bp Feature: domain Description: AraC Location: 45263-45572 bp Feature: domain Description: AraC Location: 45263-45572 bp Feature: gene Location: 45969-47060 bp Ori: BAY59176.1 Feature: domain Description: FrsA Location: 46113-47052 bp Feature: domain Description: FrsA Location: 461 1 3-47052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsB (COG1662), INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), McrA (COG4058), HNH (pfam01844), Uma2 (pfam05685), AraC_N (pfam06719)
AraC (COG2207), FrsA (COG1073)

Seq: AP018205.1 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome (553673 bp)
Overview 1 RT 1: 2943-11017 bp Neighborhood of RT #1 [2943, 11193] HTH_29 YjbI YjbI RVT_N RVT-GII GIIM HNH InsA DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 2943-3365 bp Ori: BAY59519.1 Feature: domain Description: HTH_29 Location: 2997-3126 bp Feature: domain Description: HTH_2 9 Location: 2 997-312 6 bp Feature: gene Location: 4260-6281 bp Ori: BAY59520.1 Feature: domain Description: YjbI Location: 4290-4422 bp Feature: domain Description: YjbI Location: 42 90-442 2 bp Feature: domain Description: YjbI Location: 5016-5871 bp Feature: domain Description: YjbI Location: 5016-5871 bp Feature: gene Location: 6465-8147 bp Ori: BAY59521.1 Feature: domain Description: RVT_N Location: 6510-6708 bp Feature: domain Description: RVT_N Location: 6510-6708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6756-7413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6756-7413 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7746 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7746 bp Feature: domain Description: HNH Note: nucleases Location: 7956-8091 bp Feature: domain Description: HNH Note: nucleases Location: 7956-8091 bp Feature: gene Location: 9304-9603 bp Ori: BAY59522.1 Feature: domain Description: InsA Location: 9307-9535 bp Feature: domain Description: InsA Location: 9307-9535 bp Feature: gene Location: 9937-11193 bp Ori: BAY59523.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 9967-10435 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 9967-10435 bp Feature: domain Description: Transposase_20 Location: 10765-11017 bp Feature: domain Description: Transposase_2 0 Location: 10765-11017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), YjbI (COG2346), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), InsA (COG3677), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)