myRT

myRT report for GCA_002368395.1_ASM236839v1

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Seq: AP018254.1 Calothrix sp. NIES-3974 DNA, complete genome (5985875 bp)
Overview 1 RT 1: 3850964-3857919 bp 2 RT 2: 4163497-4168204 bp 3 RT 3: 4223870-4226618 bp 4 RT 4: 5090237-5100142 bp Neighborhood of RT #1 [3850964, 3858032] HNH RVT_N RVT-GII VacB Neighborhood of RT #2 [4163497, 4168530] DUF3172 AMIN RVT_N RVT-GII HNH TPM_phosphatase Neighborhood of RT #3 [4223870, 4226618] HNH RVT_N RVT-GII Neighborhood of RT #4 [5090237, 5100150] PBP2_Fbp SLH OprB RVT_N RVT-GII GIIM McrA COG4299 Bcp Feature: gene Location: 3850964-3851173 bp Feature: gene Location: 3851170-3851496 bp Ori: BAZ06492.1 Feature: domain Description: HNH Note: nucleases Location: 3851248-3851383 bp Feature: domain Description: HNH Note: nucleases Location: 3851 248-3851 383 bp Feature: gene Location: 3851451-3852095 bp Ori: BAZ06493.1 Feature: domain Description: RVT_N Location: 3851541-3851787 bp Feature: domain Description: RVT_N Location: 3851 541 -3851 787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3851829-3852060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3851 829-3852060 bp Feature: gene Location: 3853239-3854243 bp Feature: gene Location: 3855645-3858032 bp Ori: BAZ06495.1 Feature: domain Description: VacB Location: 3855651-3857919 bp Feature: domain Description: VacB Location: 3855651 -385791 9 bp Feature: gene Location: 4163497-4164033 bp Ori: BAZ06773.1 Feature: domain Description: DUF3172 Location: 4163566-4163983 bp Feature: domain Description: DUF31 72 Location: 41 63566-41 63983 bp Feature: gene Location: 4164581-4165573 bp Ori: BAZ06774.1 Feature: domain Description: AMIN Location: 4164689-4164941 bp Feature: domain Description: AMIN Location: 41 64689-41 64941 bp Feature: gene Location: 4166465-4167109 bp Ori: BAZ06775.1 Feature: domain Description: RVT_N Location: 4166555-4166801 bp Feature: domain Description: RVT_N Location: 41 66555-41 66801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166843-4167074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66843-41 67074 bp Feature: gene Location: 4167064-4167390 bp Ori: BAZ06776.1 Feature: domain Description: HNH Note: nucleases Location: 4167142-4167277 bp Feature: domain Description: HNH Note: nucleases Location: 41 671 42-41 67277 bp Feature: gene Location: 4167679-4168530 bp Ori: BAZ06777.1 Feature: domain Description: TPM_phosphatase Location: 4167859-4168204 bp Feature: domain Description: TPM_phosphatase Location: 41 67859-41 68204 bp Feature: gene Location: 4223870-4224319 bp Feature: gene Location: 4224316-4224642 bp Ori: BAZ06816.1 Feature: domain Description: HNH Note: nucleases Location: 4224394-4224529 bp Feature: domain Description: HNH Note: nucleases Location: 4224394-4224529 bp Feature: gene Location: 4224597-4225241 bp Ori: BAZ06817.1 Feature: domain Description: RVT_N Location: 4224687-4224933 bp Feature: domain Description: RVT_N Location: 4224687-4224933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4224975-4225206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4224975-4225206 bp Feature: gene Location: 4225826-4226431 bp Feature: gene Location: 4226451-4226618 bp Feature: gene Location: 5090237-5091247 bp Ori: BAZ07497.1 Feature: domain Description: PBP2_Fbp Location: 5090333-5091242 bp Feature: domain Description: PBP2_Fbp Location: 5090333-5091 242 bp Feature: gene Location: 5092615-5094156 bp Ori: BAZ07498.1 Feature: domain Description: SLH Location: 5092747-5092873 bp Feature: domain Description: SLH Location: 5092747-5092873 bp Feature: domain Description: OprB Location: 5092948-5094154 bp Feature: domain Description: OprB Location: 5092948-50941 54 bp Feature: gene Location: 5095901-5097775 bp Ori: BAZ07499.1 Feature: domain Description: RVT_N Location: 5095991-5096237 bp Feature: domain Description: RVT_N Location: 5095991 -5096237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5096279-5096972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5096279-5096972 bp Feature: domain Description: GIIM Note: maturase Location: 5097071-5097302 bp Feature: domain Description: GIIM Note: maturase Location: 5097071 -5097302 bp Feature: domain Description: McrA Location: 5097398-5097665 bp Feature: domain Description: McrA Location: 5097398-5097665 bp Feature: gene Location: 5098083-5099309 bp Ori: BAZ07500.1 Feature: domain Description: COG4299 Location: 5098086-5099307 bp Feature: domain Description: COG4299 Location: 5098086-5099307 bp Feature: gene Location: 5099698-5100150 bp Ori: BAZ07501.1 Feature: domain Description: Bcp Location: 5099704-5100142 bp Feature: domain Description: Bcp Location: 5099704-51 001 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT_N (pfam13655), RVT-GII, VacB (COG0557), DUF3172 (pfam11371), AMIN (pfam11741), TPM_phosphatase (pfam04536), PBP2_Fbp (cd13543), SLH (pfam00395), OprB (pfam04966)
GIIM (pfam08388), McrA (COG4058), COG4299 (Predicted acyltransferase ), Bcp (COG1225)