myRT

myRT report for GCA_002370195.2_ASM237019v2

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Seq: AP018335.1 Ureibacillus thermosphaericus DNA, complete geonome, strain: A1 (3488104 bp)
Overview 1 RT 1: 366710-372701 bp 2 RT 2: 506492-510887 bp 3 RT 3: 552489-557037 bp 4 RT 4: 577889-584483 bp 5 RT 5: 948730-955076 bp 6 RT 6: 995104-1000135 bp 7 RT 7: 2154583-2159487 bp 8 RT 8: 2321744-2326402 bp 9 RT 9: 2363938-2369884 bp 10 RT 10: 2655720-2661224 bp 11 RT 11: 2993144-2998699 bp 12 RT 12: 3043430-3047943 bp 13 RT 13: 3399650-3403227 bp Neighborhood of RT #1 [366710, 372766] PRK05469 RVT-GII GIIM EmrE Neighborhood of RT #2 [506492, 510895] glmU SpoVG RVT-GII GIIM TIGR00004 Neighborhood of RT #3 [552489, 557037] Response_reg YcbB gltP RVT-GII group_II_RT_mat Neighborhood of RT #4 [577889, 584587] HDGYP RVT-GII GIIM PRK05560 Neighborhood of RT #5 [948730, 955078] PRK07678 RVT-GII GIIM Ggt Neighborhood of RT #6 [995104, 1000152] Lrp RVT-GII GIIM DUF5068 ArgO Neighborhood of RT #7 [2154583, 2159492] COG4699 CspC RVT-GII GIIM PBP2_phosphate_like_2 PstC Neighborhood of RT #8 [2321744, 2326407] YeaQ RVT-GII GIIM PRK00911 Neighborhood of RT #9 [2363938, 2369940] GH25_BacA-like RVT-GII GIIM PDC1_DGC_like Tar YoaR Neighborhood of RT #10 [2655720, 2661224] WcaG Nramp RVT-GII GIIM YfcE Neighborhood of RT #11 [2993144, 2998776] RVT-GII GIIM HelD Neighborhood of RT #12 [3043430, 3047943] COG3464 RVT-UG2 COG4584 Neighborhood of RT #13 [3399650, 3403238] RVT-GII GIIM LamB_YcsF_like Feature: gene Location: 366710-368404 bp Feature: gene Location: 368567-369811 bp Feature: domain Description: PRK05469 Location: 368576-369788 bp Feature: domain Description: PRK05469 Location: 368576-369788 bp Feature: gene Location: 369869-371248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370190-370808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3701 90-370808 bp Feature: domain Description: GIIM Note: maturase Location: 370856-371069 bp Feature: domain Description: GIIM Note: maturase Location: 370856-371 069 bp Feature: gene Location: 371376-371609 bp Feature: gene Location: 371798-372766 bp Feature: domain Description: EmrE Location: 371912-372701 bp Feature: domain Description: EmrE Location: 371 91 2-372701 bp Feature: gene Location: 506492-507856 bp Feature: domain Description: glmU Location: 506507-507851 bp Feature: domain Description: glmU Location: 506507-507851 bp Feature: gene Location: 508111-508419 bp Feature: domain Description: SpoVG Location: 508114-508390 bp Feature: domain Description: SpoVG Location: 5081 1 4-508390 bp Feature: gene Location: 508653-510032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508974-509592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508974-509592 bp Feature: domain Description: GIIM Note: maturase Location: 509640-509853 bp Feature: domain Description: GIIM Note: maturase Location: 509640-509853 bp Feature: gene Location: 510178-510411 bp Feature: gene Location: 510521-510895 bp Feature: domain Description: TIGR00004 Location: 510527-510887 bp Feature: domain Description: TIGR00004 Location: 51 0527-51 0887 bp Feature: gene Location: 552489-553367 bp Feature: domain Description: Response_reg Location: 552501-552819 bp Feature: domain Description: Response_reg Location: 552501 -55281 9 bp Feature: domain Description: YcbB Location: 552954-553338 bp Feature: domain Description: YcbB Location: 552954-553338 bp Feature: gene Location: 553457-554728 bp Feature: domain Description: gltP Location: 553466-554723 bp Feature: domain Description: gltP Location: 553466-554723 bp Feature: gene Location: 554958-555422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554961-555417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554961 -55541 7 bp Feature: gene Location: 555431-555670 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 555461-555668 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 555461 -555668 bp Feature: gene Location: 556474-557037 bp Feature: gene Location: 577889-578215 bp Feature: gene Location: 578928-580028 bp Feature: domain Description: HDGYP Location: 579186-579948 bp Feature: domain Description: HDGYP Location: 5791 86-579948 bp Feature: gene Location: 580199-581578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580520-581138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580520-581 1 38 bp Feature: domain Description: GIIM Note: maturase Location: 581186-581399 bp Feature: domain Description: GIIM Note: maturase Location: 581 1 86-581 399 bp Feature: gene Location: 581706-581939 bp Feature: gene Location: 582056-584587 bp Feature: domain Description: PRK05560 Location: 582077-584483 bp Feature: domain Description: PRK05560 Location: 582077-584483 bp Feature: gene Location: 948730-950085 bp Feature: domain Description: PRK07678 Location: 948739-950080 bp Feature: domain Description: PRK07678 Location: 948739-950080 bp Feature: gene Location: 950559-950792 bp Feature: gene Location: 950917-952299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951241-951859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 241 -951 859 bp Feature: domain Description: GIIM Note: maturase Location: 951907-952120 bp Feature: domain Description: GIIM Note: maturase Location: 951 907-9521 20 bp Feature: gene Location: 952833-953186 bp Feature: gene Location: 953444-955078 bp Feature: domain Description: Ggt Location: 953468-955076 bp Feature: domain Description: Ggt Location: 953468-955076 bp Feature: gene Location: 995104-995601 bp Feature: domain Description: Lrp Location: 995107-995554 bp Feature: domain Description: Lrp Location: 9951 07-995554 bp Feature: gene Location: 995770-996003 bp Feature: gene Location: 996585-997973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996909-997527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996909-997527 bp Feature: domain Description: GIIM Note: maturase Location: 997575-997788 bp Feature: domain Description: GIIM Note: maturase Location: 997575-997788 bp Feature: gene Location: 998048-999412 bp Feature: domain Description: DUF5068 Location: 998351-998885 bp Feature: domain Description: DUF5068 Location: 998351 -998885 bp Feature: gene Location: 999541-1000152 bp Feature: domain Description: ArgO Location: 999544-1000135 bp Feature: domain Description: ArgO Location: 999544-1 0001 35 bp Feature: gene Location: 2154583-2154894 bp Feature: domain Description: COG4699 Location: 2154613-2154877 bp Feature: domain Description: COG4699 Location: 21 5461 3-21 54877 bp Feature: gene Location: 2155147-2155347 bp Feature: domain Description: CspC Location: 2155150-2155342 bp Feature: domain Description: CspC Location: 21 551 50-21 55342 bp Feature: gene Location: 2155872-2157260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2156196-2156814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 561 96-21 5681 4 bp Feature: domain Description: GIIM Note: maturase Location: 2156862-2157075 bp Feature: domain Description: GIIM Note: maturase Location: 21 56862-21 57075 bp Feature: gene Location: 2157512-2158477 bp Feature: domain Description: PBP2_phosphate_like_2 Location: 2157659-2158415 bp Feature: domain Description: PBP2_phosphate_like_2 Location: 21 57659-21 5841 5 bp Feature: gene Location: 2158548-2159492 bp Feature: domain Description: PstC Location: 2158596-2159487 bp Feature: domain Description: PstC Location: 21 58596-21 59487 bp Feature: gene Location: 2321744-2322001 bp Feature: domain Description: YeaQ Location: 2321747-2321975 bp Feature: domain Description: YeaQ Location: 2321 747-2321 975 bp Feature: gene Location: 2322537-2322770 bp Feature: gene Location: 2322895-2323746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323219-2323741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232321 9-2323741 bp Feature: gene Location: 2323891-2324277 bp Feature: domain Description: GIIM Note: maturase Location: 2323894-2324098 bp Feature: domain Description: GIIM Note: maturase Location: 2323894-2324098 bp Feature: gene Location: 2324737-2326407 bp Feature: domain Description: PRK00911 Location: 2324740-2326402 bp Feature: domain Description: PRK0091 1 Location: 2324740-2326402 bp Feature: gene Location: 2363938-2364588 bp Feature: domain Description: GH25_BacA-like Location: 2363950-2364556 bp Feature: domain Description: GH25_BacA-like Location: 2363950-2364556 bp Feature: gene Location: 2364786-2365019 bp Feature: gene Location: 2365144-2366532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365468-2366086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365468-2366086 bp Feature: domain Description: GIIM Note: maturase Location: 2366134-2366347 bp Feature: domain Description: GIIM Note: maturase Location: 23661 34-2366347 bp Feature: gene Location: 2366749-2368752 bp Feature: domain Description: PDC1_DGC_like Location: 2366953-2367289 bp Feature: domain Description: PDC1 _DGC_like Location: 2366953-2367289 bp Feature: domain Description: Tar Location: 2367514-2368750 bp Feature: domain Description: Tar Location: 236751 4-2368750 bp Feature: gene Location: 2369014-2369940 bp Feature: domain Description: YoaR Location: 2369275-2369884 bp Feature: domain Description: YoaR Location: 2369275-2369884 bp Feature: gene Location: 2655720-2656739 bp Feature: domain Description: WcaG Location: 2655813-2656689 bp Feature: domain Description: WcaG Location: 265581 3-2656689 bp Feature: gene Location: 2656751-2658019 bp Feature: domain Description: Nramp Location: 2656904-2657933 bp Feature: domain Description: Nramp Location: 2656904-2657933 bp Feature: gene Location: 2658264-2659643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658585-2659203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658585-2659203 bp Feature: domain Description: GIIM Note: maturase Location: 2659251-2659464 bp Feature: domain Description: GIIM Note: maturase Location: 2659251 -2659464 bp Feature: gene Location: 2660554-2661072 bp Feature: domain Description: YfcE Location: 2660566-2661034 bp Feature: domain Description: YfcE Location: 2660566-2661 034 bp Feature: gene Location: 2661075-2661224 bp Feature: gene Location: 2993144-2993764 bp Feature: gene Location: 2993809-2994342 bp Feature: gene Location: 2994561-2995940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994882-2995500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994882-2995500 bp Feature: domain Description: GIIM Note: maturase Location: 2995548-2995761 bp Feature: domain Description: GIIM Note: maturase Location: 2995548-2995761 bp Feature: gene Location: 2996068-2996301 bp Feature: gene Location: 2996464-2998776 bp Feature: domain Description: HelD Location: 2996497-2998699 bp Feature: domain Description: HelD Location: 2996497-2998699 bp Feature: gene Location: 3043430-3043624 bp Feature: gene Location: 3043838-3044317 bp Feature: domain Description: COG3464 Location: 3043856-3044288 bp Feature: domain Description: COG3464 Location: 3043856-3044288 bp Feature: gene Location: 3044418-3045854 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3044694-3045522 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3044694-3045522 bp Feature: gene Location: 3046529-3047554 bp Feature: domain Description: COG4584 Location: 3046577-3047387 bp Feature: domain Description: COG4584 Location: 3046577-3047387 bp Feature: gene Location: 3047551-3047943 bp Feature: gene Location: 3399650-3399781 bp Feature: gene Location: 3399976-3400155 bp Feature: gene Location: 3400268-3401653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3400589-3401207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3400589-3401 207 bp Feature: domain Description: GIIM Note: maturase Location: 3401255-3401468 bp Feature: domain Description: GIIM Note: maturase Location: 3401 255-3401 468 bp Feature: gene Location: 3402151-3402354 bp Feature: gene Location: 3402522-3403238 bp Feature: domain Description: LamB_YcsF_like Location: 3402525-3403227 bp Feature: domain Description: LamB_YcsF_like Location: 3402525-3403227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05469 (tripeptide aminopeptidase PepT), RVT-GII, GIIM (pfam08388), EmrE (pfam13536), glmU (TIGR01173), SpoVG (pfam04026), TIGR00004 (reactive intermediate/imine deaminase), Response_reg (pfam00072), YcbB (pfam08664), gltP (PRK11283)
group_II_RT_mat (TIGR04416), HDGYP (COG2206), PRK05560 (DNA gyrase subunit A; Validated), PRK07678 (aminotransferase; Validated), Ggt (COG0405), Lrp (COG1522), DUF5068 (pfam16781), ArgO (COG1279), COG4699 (Uncharacterized protein ), CspC (COG1278)
PBP2_phosphate_like_2 (cd13654), PstC (COG0573), YeaQ (COG2261), PRK00911 (dihydroxy-acid dehydratase; Provisional), GH25_BacA-like (cd06418), PDC1_DGC_like (cd12914), Tar (COG0840), YoaR (COG2720), WcaG (COG0451), Nramp (pfam01566)
YfcE (COG0622), HelD (COG3973), COG3464 (Transposase ), RVT-UG2, COG4584 (Transposase ), LamB_YcsF_like (cd10787)