myRT

myRT report for GCA_002386185.1_ASM238618v1

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Seq: CP023496.1 Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence (169687 bp)
Overview 1 RT 1: 59457-63481 bp Neighborhood of RT #1 [59457, 63481] RVT-GII GIIM Feature: gene Location: 59457-59801 bp Feature: gene Location: 60103-60370 bp Feature: gene Location: 60529-61815 bp Ori: ATF29502.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60745-61360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60745-61 360 bp Feature: domain Description: GIIM Note: maturase Location: 61420-61654 bp Feature: domain Description: GIIM Note: maturase Location: 61 420-61 654 bp Feature: gene Location: 62189-62389 bp Feature: gene Location: 63341-63481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CP023497.1 Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome (2702288 bp)
Overview 1 RT 1: 1122259-1126886 bp 2 RT 2: 1230214-1237874 bp Neighborhood of RT #1 [1122259, 1127656] RVT-UG2 YvbJ zf-ribbon_3 Neighborhood of RT #2 [1230214, 1237874] DUF262 DUF1524 Trypsin_2 RVT-Retrons PKc Feature: gene Location: 1122259-1123650 bp Feature: gene Location: 1123620-1124012 bp Feature: gene Location: 1124051-1125370 bp Ori: ATF30478.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1124219-1125038 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 112 42 19-112 5038 bp Feature: gene Location: 1125830-1126543 bp Ori: ATF30479.1 Feature: domain Description: YvbJ Location: 1125836-1126085 bp Feature: domain Description: YvbJ Location: 112 5836-112 6085 bp Feature: gene Location: 1126814-1127656 bp Ori: ATF30480.1 Feature: domain Description: zf-ribbon_3 Location: 1126820-1126886 bp Feature: domain Description: zf-ribbon_3 Location: 112 682 0-112 6886 bp Feature: gene Location: 1230214-1231902 bp Ori: ATF30572.1 Feature: domain Description: DUF262 Location: 1230265-1230907 bp Feature: domain Description: DUF2 62 Location: 12 302 65-12 30907 bp Feature: domain Description: DUF1524 Location: 1231471-1231873 bp Feature: domain Description: DUF152 4 Location: 12 31471-12 31873 bp Feature: gene Location: 1232104-1233786 bp Ori: ATF30573.1 Feature: domain Description: Trypsin_2 Location: 1233208-1233682 bp Feature: domain Description: Trypsin_2 Location: 12 332 08-12 33682 bp Feature: gene Location: 1234618-1236401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1234750-1235347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 34750-12 35347 bp Feature: gene Location: 1236689-1237360 bp Ori: ATF30574.1 Feature: domain Description: PKc Location: 1236707-1237325 bp Feature: domain Description: PKc Location: 12 36707-12 3732 5 bp Feature: gene Location: 1237581-1237874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, YvbJ (COG4640), zf-ribbon_3 (pfam13248), DUF262 (pfam03235), DUF1524 (pfam07510), Trypsin_2 (pfam13365), RVT-Retrons, PKc (cd00180)