myRT

myRT report for GCA_002407505.1_ASM240750v1

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Seq: CP012737.1 Pseudoalteromonas sp. 1_2015MBL_MicDiv chromosome 1, complete sequence (3952635 bp)
Overview 1 RT 1: 1393776-1399721 bp 2 RT 2: 2991814-2996053 bp 3 RT 3: 3165241-3170657 bp 4 RT 4: 3558920-3565370 bp Neighborhood of RT #1 [1393776, 1399987] bcp RVT-Retrons AAA_21 DDE_Tnp_1 Neighborhood of RT #2 [2991814, 2996202] GSDH RVT-GII NTR_TIMP_like COG3547 Neighborhood of RT #3 [3165241, 3170662] RVT-UG17 SLATT_5 PRK14994 Neighborhood of RT #4 [3558920, 3565370] groEL RVT-Retrons DDE_Tnp_1 Feature: gene Location: 1393776-1394132 bp Feature: gene Location: 1394708-1395166 bp Ori: ATG77177.1 Feature: domain Description: bcp Location: 1394714-1395161 bp Feature: domain Description: bcp Location: 1 39471 4-1 3951 61 bp Feature: gene Location: 1395221-1396402 bp Ori: ATG79241.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1395356-1396010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 395356-1 39601 0 bp Feature: gene Location: 1396539-1398494 bp Ori: ATG77178.1 Feature: domain Description: AAA_21 Location: 1396569-1397259 bp Feature: domain Description: AAA_21 Location: 1 396569-1 397259 bp Feature: gene Location: 1398728-1399987 bp Ori: ATG77179.1 Feature: domain Description: DDE_Tnp_1 Location: 1399076-1399721 bp Feature: domain Description: DDE_Tnp_1 Location: 1 399076-1 399721 bp Feature: gene Location: 2991814-2992740 bp Ori: ATG78409.1 Feature: domain Description: GSDH Location: 2991853-2992723 bp Feature: domain Description: GSDH Location: 2991 853-2992723 bp Feature: gene Location: 2992852-2993283 bp Feature: gene Location: 2993401-2993850 bp Ori: ATG78411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993656-2993776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993656-2993776 bp Feature: gene Location: 2994473-2994919 bp Ori: ATG78412.1 Feature: domain Description: NTR_TIMP_like Location: 2994533-2994842 bp Feature: domain Description: NTR_TIMP_like Location: 2994533-2994842 bp Feature: gene Location: 2995048-2996202 bp Ori: ATG78413.1 Feature: domain Description: COG3547 Location: 2995147-2996053 bp Feature: domain Description: COG3547 Location: 29951 47-2996053 bp Feature: gene Location: 3165241-3165831 bp Feature: gene Location: 3166041-3166886 bp Feature: gene Location: 3166947-3168335 bp Ori: ATG78550.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3167178-3167778 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 31 671 78-31 67778 bp Feature: gene Location: 3168495-3169094 bp Ori: ATG78551.1 Feature: domain Description: SLATT_5 Location: 3168507-3169071 bp Feature: domain Description: SLATT_5 Location: 31 68507-31 69071 bp Feature: gene Location: 3169805-3170662 bp Ori: ATG78552.1 Feature: domain Description: PRK14994 Location: 3169820-3170657 bp Feature: domain Description: PRK1 4994 Location: 31 69820-31 70657 bp Feature: gene Location: 3558920-3560569 bp Ori: ATG78882.1 Gene: groEL Feature: domain Description: groEL Location: 3558926-3560549 bp Feature: domain Description: groEL Location: 3558926-3560549 bp Feature: gene Location: 3561058-3561258 bp Feature: gene Location: 3561251-3563095 bp Ori: ATG78884.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3561386-3562094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3561 386-3562094 bp Feature: gene Location: 3563512-3564771 bp Ori: ATG78885.1 Feature: domain Description: DDE_Tnp_1 Location: 3563863-3564505 bp Feature: domain Description: DDE_Tnp_1 Location: 3563863-3564505 bp Feature: gene Location: 3565089-3565370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bcp (PRK09437), RVT-Retrons, AAA_21 (pfam13304), DDE_Tnp_1 (pfam01609), GSDH (pfam07995), RVT-GII, NTR_TIMP_like (cd03577), COG3547 (Transposase ), RVT-UG17, SLATT_5 (pfam18160)
PRK14994 (SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional), groEL (PRK12852)

Seq: CP012738.1 Pseudoalteromonas sp. 1_2015MBL_MicDiv chromosome 2, complete sequence (907248 bp)
Overview 1 RT 1: 344629-351177 bp 2 RT 2: 472375-474932 bp Neighborhood of RT #1 [344629, 351177] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM DUF772 DDE_Tnp_1_6 Neighborhood of RT #2 [472375, 475111] DUF4065 RVT-GII GIIM Feature: gene Location: 344629-345174 bp Feature: gene Location: 345214-346482 bp Ori: ATG79614.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 345253-345721 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3452 53-34572 1 bp Feature: domain Description: Transposase_20 Location: 346051-346303 bp Feature: domain Description: Transposase_2 0 Location: 346051-346303 bp Feature: gene Location: 347371-348660 bp Ori: ATG79615.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347626-348295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34762 6-3482 95 bp Feature: domain Description: GIIM Note: maturase Location: 348388-348580 bp Feature: domain Description: GIIM Note: maturase Location: 348388-348580 bp Feature: gene Location: 348946-350442 bp Ori: ATG79616.1 Feature: domain Description: DUF772 Location: 349069-349276 bp Feature: domain Description: DUF772 Location: 349069-3492 76 bp Feature: domain Description: DDE_Tnp_1_6 Location: 350038-350425 bp Feature: domain Description: DDE_Tnp_1_6 Location: 350038-35042 5 bp Feature: gene Location: 350587-351177 bp Feature: gene Location: 472375-473256 bp Feature: gene Location: 473256-473735 bp Ori: ATG79712.1 Feature: domain Description: DUF4065 Location: 473337-473643 bp Feature: domain Description: DUF4065 Location: 473337-473643 bp Feature: gene Location: 473810-475111 bp Ori: ATG79713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474050-474674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474050-474674 bp Feature: domain Description: GIIM Note: maturase Location: 474713-474932 bp Feature: domain Description: GIIM Note: maturase Location: 474713-474932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), DUF4065 (pfam13274)