myRT

myRT report for GCA_002442535.1_ASM244253v1

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Seq: CP023646.1 Shigella sonnei strain CFSAN030807 plasmid pCFSAN030807_1, complete sequence (214673 bp)
Overview 1 RT 1: 77675-81044 bp 2 RT 2: 170524-172657 bp 3 RT 3: 182158-185875 bp 4 RT 4: 209664-213590 bp Neighborhood of RT #1 [77675, 81376] COG3547 DDE_Tnp_IS66_C RVT-GII COG4584 Neighborhood of RT #2 [170524, 173098] RVT-GII InsE Neighborhood of RT #3 [182158, 185875] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII PRK09413 Neighborhood of RT #4 [209664, 213634] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 DUF1472 Feature: gene Location: 77675-78157 bp Feature: domain Description: COG3547 Location: 77693-78125 bp Feature: domain Description: COG3547 Location: 77693-781 25 bp Feature: gene Location: 78187-78366 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 78232-78343 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 78232-78343 bp Feature: gene Location: 78449-79575 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78545-79007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78545-79007 bp Feature: gene Location: 79675-80094 bp Feature: gene Location: 80204-81376 bp Ori: ATH90990.1 Feature: domain Description: COG4584 Location: 80207-81044 bp Feature: domain Description: COG4584 Location: 80207-81 044 bp Feature: gene Location: 170524-170946 bp Feature: gene Location: 171337-171515 bp Feature: gene Location: 171609-171848 bp Ori: ATH91073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171615-171822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 61 5-1 71 822 bp Feature: gene Location: 172043-172409 bp Feature: gene Location: 172411-173098 bp Feature: domain Description: InsE Location: 172414-172657 bp Feature: domain Description: InsE Location: 1 7241 4-1 72657 bp Feature: gene Location: 182158-182328 bp Feature: domain Description: OrfB_IS605 Location: 182164-182326 bp Feature: domain Description: OrfB_IS605 Location: 1 821 64-1 82326 bp Feature: gene Location: 182461-182580 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 182503-182578 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 82503-1 82578 bp Feature: gene Location: 182654-183181 bp Ori: ATH91077.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182660-182804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 82660-1 82804 bp Feature: domain Description: GIIM Note: maturase Location: 182888-183104 bp Feature: domain Description: GIIM Note: maturase Location: 1 82888-1 831 04 bp Feature: gene Location: 183265-184667 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183625-184282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83625-1 84282 bp Feature: gene Location: 185875-186235 bp Ori: ATH91078.1 Feature: domain Description: PRK09413 Location: 185923-186235 bp Feature: domain Description: PRK0941 3 Location: 1 85923-1 86235 bp Feature: gene Location: 184962-185875 bp Feature: gene Location: 209664-210695 bp Ori: ATH91095.1 Feature: domain Description: HTH_23 Location: 209742-209883 bp Feature: domain Description: HTH_23 Location: 209742-209883 bp Feature: domain Description: HTH_33 Location: 209988-210135 bp Feature: domain Description: HTH_33 Location: 209988-21 01 35 bp Feature: domain Description: DDE_3 Location: 210192-210612 bp Feature: domain Description: DDE_3 Location: 21 01 92-21 061 2 bp Feature: gene Location: 210839-211507 bp Ori: ATH91096.1 Feature: domain Description: HTH_23 Location: 210947-211034 bp Feature: domain Description: HTH_23 Location: 21 0947-21 1 034 bp Feature: domain Description: InsE Location: 211163-211358 bp Feature: domain Description: InsE Location: 21 1 1 63-21 1 358 bp Feature: gene Location: 211601-212248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211736-212222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 736-21 2222 bp Feature: gene Location: 212247-213029 bp Feature: domain Description: DDE_Tnp_1 Location: 212253-212961 bp Feature: domain Description: DDE_Tnp_1 Location: 21 2253-21 2961 bp Feature: gene Location: 213200-213634 bp Feature: domain Description: DUF1472 Location: 213290-213590 bp Feature: domain Description: DUF1 472 Location: 21 3290-21 3590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, COG4584 (Transposase ), InsE (COG2963), OrfB_IS605 (pfam01385), GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), HTH_23 (pfam13384), HTH_33 (pfam13592)
DDE_3 (pfam13358), DDE_Tnp_1 (pfam01609), DUF1472 (pfam07339)