myRT

myRT report for GCA_002442995.2_ASM244299v2

Download annotations/find similar RTs

Seq: CP020753.1 Shigella flexneri 1c strain Y394 chromosome, complete genome (4584634 bp)
Overview 1 RT 1: 2321510-2324736 bp Neighborhood of RT #1 [2321510, 2324736] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2321510-2321935 bp Feature: domain Description: PHA02517 Location: 2321600-2321936 bp Feature: domain Description: PHA0251 7 Location: 2321 600-2321 936 bp Feature: gene Location: 2321931-2322299 bp Feature: gene Location: 2322608-2324116 bp Ori: ATH68557.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322866-2323598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322866-2323598 bp Feature: domain Description: GIIM Note: maturase Location: 2323673-2323871 bp Feature: domain Description: GIIM Note: maturase Location: 2323673-2323871 bp Feature: gene Location: 2324311-2324415 bp Feature: domain Description: PHA02517 Location: 2324314-2324389 bp Feature: domain Description: PHA0251 7 Location: 232431 4-2324389 bp Feature: gene Location: 2324524-2324736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP030773.1 Shigella flexneri 1c strain Y394 plasmid pINV-Y394, complete sequence (221293 bp)
Overview 1 RT 1: 31695-34335 bp 2 RT 2: 142023-143908 bp 3 RT 3: 154601-157007 bp Neighborhood of RT #1 [31695, 34352] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [142023, 143908] RVT-GII Neighborhood of RT #3 [154601, 157007] PRK09413 RVT-GII Tra5 Feature: gene Location: 31695-32177 bp Feature: domain Description: COG3547 Location: 31713-32166 bp Feature: domain Description: COG3547 Location: 31713-32 166 bp Feature: gene Location: 32207-32386 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32252-32363 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32 2 52 -32 363 bp Feature: gene Location: 32469-33647 bp Ori: QEF95934.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32616-33270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 616-332 70 bp Feature: domain Description: GIIM Note: maturase Location: 33348-33570 bp Feature: domain Description: GIIM Note: maturase Location: 33348-33570 bp Feature: gene Location: 33697-34116 bp Feature: gene Location: 34173-34352 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34179-34335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34179-34335 bp Feature: gene Location: 142023-142388 bp Feature: gene Location: 142836-143014 bp Feature: gene Location: 143108-143347 bp Ori: QEF95879.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143114-143321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143114-14332 1 bp Feature: gene Location: 143304-143549 bp Feature: gene Location: 143542-143908 bp Feature: gene Location: 154601-154961 bp Ori: QEF95884.1 Feature: domain Description: PRK09413 Location: 154649-154961 bp Feature: domain Description: PRK09413 Location: 154649-154961 bp Feature: gene Location: 154961-155874 bp Feature: gene Location: 155886-156677 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156186-156678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156186-156678 bp Feature: gene Location: 156690-156908 bp Feature: domain Description: Tra5 Location: 156699-156891 bp Feature: domain Description: Tra5 Location: 156699-156891 bp Feature: gene Location: 156927-157007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PRK09413 (IS2 repressor TnpA; Reviewed), Tra5 (COG2801)