myRT

myRT report for GCA_002531755.2_ASM253175v2

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Seq: CP035002.1 Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence (845857 bp)
Overview 1 RT 1: 43736-46472 bp 2 RT 2: 58149-61478 bp 3 RT 3: 596212-598948 bp Neighborhood of RT #1 [43736, 46567] COG3415 RVT-GII DDE_3 Neighborhood of RT #2 [58149, 61483] HTH_32 RVT-GII rve COG5489 Neighborhood of RT #3 [596212, 599043] COG3415 RVT-GII DDE_3 Feature: gene Location: 43736-44190 bp Feature: domain Description: COG3415 Location: 43739-44123 bp Feature: domain Description: COG341 5 Location: 43739-441 23 bp Feature: gene Location: 44286-44605 bp Feature: gene Location: 44738-45998 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44954-45029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44954-45029 bp Feature: gene Location: 45893-46159 bp Feature: gene Location: 46079-46567 bp Feature: domain Description: DDE_3 Location: 46091-46472 bp Feature: domain Description: DDE_3 Location: 46091 -46472 bp Feature: gene Location: 58149-58389 bp Feature: domain Description: HTH_32 Location: 58170-58302 bp Feature: domain Description: HTH_32 Location: 581 70-58302 bp Feature: gene Location: 58414-58733 bp Feature: gene Location: 58866-59913 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59082-59157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59082-591 57 bp Feature: gene Location: 59971-60963 bp Ori: QAS82583.1 Feature: domain Description: rve Location: 60364-60760 bp Feature: domain Description: rve Location: 60364-60760 bp Feature: gene Location: 61160-61483 bp Ori: QAS82584.1 Feature: domain Description: COG5489 Location: 61166-61478 bp Feature: domain Description: COG5489 Location: 61 1 66-61 478 bp Feature: gene Location: 596212-596666 bp Feature: domain Description: COG3415 Location: 596215-596599 bp Feature: domain Description: COG341 5 Location: 59621 5-596599 bp Feature: gene Location: 596762-597103 bp Feature: gene Location: 597214-598474 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597430-597505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597430-597505 bp Feature: gene Location: 598369-598635 bp Feature: gene Location: 598555-599043 bp Feature: domain Description: DDE_3 Location: 598567-598948 bp Feature: domain Description: DDE_3 Location: 598567-598948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, DDE_3 (pfam13358), HTH_32 (pfam13565), rve (pfam00665), COG5489 (Uncharacterized conserved protein, DUF736 family )

Seq: CP034999.1 Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence (671287 bp)
Overview 1 RT 1: 18563-21594 bp 2 RT 2: 648875-651906 bp Neighborhood of RT #1 [18563, 21594] COG3415 RVT-GII GIIM DDE_3 Neighborhood of RT #2 [648875, 651906] COG3415 RVT-GII GIIM DDE_3 Feature: gene Location: 18563-19016 bp Feature: domain Description: COG3415 Location: 18569-18818 bp Feature: domain Description: COG3415 Location: 18569-18818 bp Feature: gene Location: 19119-19440 bp Feature: gene Location: 19551-20808 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19767-20421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19767-2 042 1 bp Feature: domain Description: GIIM Note: maturase Location: 20502-20646 bp Feature: domain Description: GIIM Note: maturase Location: 2 0502 -2 0646 bp Feature: gene Location: 20889-21377 bp Feature: domain Description: DDE_3 Location: 20895-21291 bp Feature: domain Description: DDE_3 Location: 2 0895-2 12 91 bp Feature: gene Location: 21394-21594 bp Feature: gene Location: 648875-649328 bp Feature: domain Description: COG3415 Location: 648884-649130 bp Feature: domain Description: COG3415 Location: 648884-649130 bp Feature: gene Location: 649431-649752 bp Feature: gene Location: 649863-651120 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 650079-650733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 650079-650733 bp Feature: domain Description: GIIM Note: maturase Location: 650814-650958 bp Feature: domain Description: GIIM Note: maturase Location: 650814-650958 bp Feature: gene Location: 651201-651689 bp Feature: domain Description: DDE_3 Location: 651207-651603 bp Feature: domain Description: DDE_3 Location: 6512 07-651603 bp Feature: gene Location: 651706-651906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)

Seq: CP035001.1 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence (709381 bp)
Overview 1 RT 1: 463654-468850 bp 2 RT 2: 550753-555861 bp Neighborhood of RT #1 [463654, 469362] RVT-UG20 DarT Macro_Poa1p_like Neighborhood of RT #2 [550753, 555866] Methyltransf_17 DUF3095 RVT-GII GIIM WecC Feature: gene Location: 463654-464688 bp Feature: gene Location: 465133-465384 bp Feature: gene Location: 465584-466645 bp Ori: QAS82293.1 Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 465587-465896 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 465587-465896 bp Feature: gene Location: 467471-468460 bp Ori: QAS82294.1 Feature: domain Description: DarT Location: 467576-468146 bp Feature: domain Description: DarT Location: 467576-468146 bp Feature: gene Location: 468451-469362 bp Ori: QAS82295.1 Feature: domain Description: Macro_Poa1p_like Location: 468457-468850 bp Feature: domain Description: Macro_Poa1p_like Location: 468457-468850 bp Feature: gene Location: 550753-551232 bp Ori: QAS82371.1 Feature: domain Description: Methyltransf_17 Location: 550756-551227 bp Feature: domain Description: Methyltransf_17 Location: 550756-551227 bp Feature: gene Location: 551357-552532 bp Ori: QAS82372.1 Feature: domain Description: DUF3095 Location: 551384-552494 bp Feature: domain Description: DUF3 095 Location: 5513 84-552494 bp Feature: gene Location: 552634-553992 bp Ori: QAS82373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552961-553573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552961-553 573 bp Feature: domain Description: GIIM Note: maturase Location: 553627-553828 bp Feature: domain Description: GIIM Note: maturase Location: 553 627-553 828 bp Feature: gene Location: 554053-554381 bp Feature: gene Location: 554529-555866 bp Ori: QAS82374.1 Feature: domain Description: WecC Location: 554559-555861 bp Feature: domain Description: WecC Location: 554559-555861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20, DarT, Macro_Poa1p_like, Methyltransf_17 (pfam12692), DUF3095 (pfam11294), RVT-GII, GIIM (pfam08388), WecC (COG0677)