myRT

myRT report for GCA_002587005.1_ASM258700v1

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Seq: CP023815.1 Escherichia coli strain IMT16316 chromosome, complete genome (4937350 bp)
Overview 1 RT 1: 1989389-1993271 bp Neighborhood of RT #1 [1989389, 1993276] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 1989389-1990105 bp Feature: domain Description: rph Location: 1989392-1990100 bp Feature: domain Description: rph Location: 1 989392-1 9901 00 bp Feature: gene Location: 1990156-1990812 bp Feature: domain Description: pyrE Location: 1990174-1990807 bp Feature: domain Description: pyrE Location: 1 9901 74-1 990807 bp Feature: gene Location: 1991110-1992069 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1991245-1991794 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 991 245-1 991 794 bp Feature: gene Location: 1992115-1992711 bp Feature: domain Description: slmA Location: 1992121-1992697 bp Feature: domain Description: slmA Location: 1 9921 21 -1 992697 bp Feature: gene Location: 1992818-1993276 bp Feature: domain Description: dut Location: 1992824-1993271 bp Feature: domain Description: dut Location: 1 992824-1 993271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: CP023816.1 Escherichia coli strain IMT16316 plasmid pEcIMT16316, complete sequence (145883 bp)
Overview 1 RT 1: 24844-28976 bp Neighborhood of RT #1 [24844, 28976] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 24844-25077 bp Feature: domain Description: DUF905 Location: 24874-25072 bp Feature: domain Description: DUF905 Location: 2 4874-2 5072 bp Feature: gene Location: 25140-25592 bp Feature: domain Description: PRK13732 Location: 25146-25590 bp Feature: domain Description: PRK13732 Location: 2 5146-2 5590 bp Feature: gene Location: 25787-27688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26054-26885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6054-2 6885 bp Feature: domain Description: Intron_maturas2 Location: 26999-27257 bp Feature: domain Description: Intron_maturas2 Location: 2 6999-2 72 57 bp Feature: domain Description: HNHc Note: nucleases Location: 27431-27593 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7431-2 7593 bp Feature: gene Location: 28430-28633 bp Feature: gene Location: 28710-28976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)