myRT

myRT report for GCA_002589795.1_ASM258979v1

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Seq: CP023900.1 Escherichia coli strain FDAARGOS_433 plasmid unnamed6, complete sequence (34323 bp)
Overview 1 RT 1: 21798-27756 bp Neighborhood of RT #1 [21798, 27764] RVT-GII Intron_maturas2 HNHc PRK10276 umuC Feature: gene Location: 21798-22394 bp Feature: gene Location: 23279-23632 bp Feature: gene Location: 23815-25716 bp Ori: ATM29630.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24082-24913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24082-2491 3 bp Feature: domain Description: Intron_maturas2 Location: 25027-25285 bp Feature: domain Description: Intron_maturas2 Location: 25027-25285 bp Feature: domain Description: HNHc Note: nucleases Location: 25459-25621 bp Feature: domain Description: HNHc Note: nucleases Location: 25459-25621 bp Feature: gene Location: 26074-26493 bp Ori: ATM29631.1 Feature: domain Description: PRK10276 Location: 26113-26479 bp Feature: domain Description: PRK1 0276 Location: 261 1 3-26479 bp Feature: gene Location: 26493-27764 bp Ori: ATM29632.1 Feature: domain Description: umuC Location: 26496-27756 bp Feature: domain Description: umuC Location: 26496-27756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP023899.1 Escherichia coli strain FDAARGOS_433 chromosome, complete genome (4711093 bp)
Overview 1 RT 1: 698104-704386 bp 2 RT 2: 1524408-1528288 bp 3 RT 3: 4468588-4474756 bp Neighborhood of RT #1 [698104, 704613] PRK10597 SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Peptidase_S74 Neighborhood of RT #2 [1524408, 1528293] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #3 [4468588, 4474756] P Q RVT-Retrons Feature: gene Location: 698104-698352 bp Ori: ATM25755.1 Feature: domain Description: PRK10597 Location: 698107-698347 bp Feature: domain Description: PRK10597 Location: 698107-698347 bp Feature: gene Location: 698575-699126 bp Ori: ATM25756.1 Feature: domain Description: SLATT_5 Location: 698581-699097 bp Feature: domain Description: SLATT_5 Location: 698581-699097 bp Feature: gene Location: 699104-700474 bp Ori: ATM25757.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 699332-699938 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 699332 -699938 bp Feature: gene Location: 700574-700789 bp Feature: gene Location: 700912-704613 bp Ori: ATM25758.1 Feature: domain Description: phage_tail_N Location: 700915-701314 bp Feature: domain Description: phage_tail_N Location: 700915-701314 bp Feature: domain Description: 7tmA_amine_R-like Location: 701731-702925 bp Feature: domain Description: 7tmA_amine_R-like Location: 701731-702 92 5 bp Feature: domain Description: Peptidase_S74 Location: 704239-704386 bp Feature: domain Description: Peptidase_S74 Location: 7042 39-704386 bp Feature: gene Location: 1524408-1525124 bp Ori: ATM26494.1 Feature: domain Description: rph Location: 1524411-1525119 bp Feature: domain Description: rph Location: 152 4411-152 5119 bp Feature: gene Location: 1525191-1525832 bp Ori: ATM26495.1 Feature: domain Description: pyrE Location: 1525194-1525827 bp Feature: domain Description: pyrE Location: 152 5194-152 582 7 bp Feature: gene Location: 1526130-1527089 bp Ori: ATM26496.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1526265-1526814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 62 65-152 6814 bp Feature: gene Location: 1527135-1527731 bp Ori: ATM26497.1 Feature: domain Description: slmA Location: 1527141-1527717 bp Feature: domain Description: slmA Location: 152 7141-152 7717 bp Feature: gene Location: 1527838-1528293 bp Ori: ATM29478.1 Feature: domain Description: dut Location: 1527841-1528288 bp Feature: domain Description: dut Location: 152 7841-152 82 88 bp Feature: gene Location: 4468588-4470354 bp Ori: ATM29185.1 Feature: domain Description: P Location: 4468615-4470349 bp Feature: domain Description: P Location: 4468615-4470349 bp Feature: gene Location: 4470354-4471379 bp Ori: ATM29186.1 Feature: domain Description: Q Location: 4470360-4471377 bp Feature: domain Description: Q Location: 4470360-4471377 bp Feature: gene Location: 4471397-4472359 bp Ori: ATM29187.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4471574-4472114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4471574-4472 114 bp Feature: gene Location: 4472522-4473445 bp Feature: gene Location: 4473755-4474756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480)
dut (TIGR00576), P (PHA02535), Q (PHA02536)

Seq: CP023895.1 Escherichia coli strain FDAARGOS_433 plasmid unnamed2, complete sequence (91648 bp)
Overview 1 RT 1: 69610-73377 bp Neighborhood of RT #1 [69610, 73377] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 69610-70032 bp Ori: ATM24931.1 Feature: domain Description: DUF1380 Location: 69613-69910 bp Feature: domain Description: DUF13 80 Location: 69613 -69910 bp Feature: gene Location: 70029-70220 bp Feature: gene Location: 70534-72201 bp Ori: ATM24933.1 Gene: ltrA Feature: domain Description: RVT_N Location: 70582-70819 bp Feature: domain Description: RVT_N Location: 70582-70819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70870-71512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70870-71512 bp Feature: domain Description: GIIM Note: maturase Location: 71563-71797 bp Feature: domain Description: GIIM Note: maturase Location: 71563 -71797 bp Feature: domain Description: HNHc Note: nucleases Location: 72007-72166 bp Feature: domain Description: HNHc Note: nucleases Location: 72007-72166 bp Feature: gene Location: 72938-73113 bp Feature: gene Location: 73258-73377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)