myRT

myRT report for GCA_002591135.1_ASM259113v1

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Seq: CP023957.1 Escherichia coli strain FDAARGOS_448 plasmid unnamed3, complete sequence (48550 bp)
Overview 1 RT 1: 3767-9073 bp Neighborhood of RT #1 [3767, 9078] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 3767-3874 bp Feature: gene Location: 4363-4569 bp Feature: gene Location: 5218-7119 bp Ori: ATM79389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5485-6316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5485-631 6 bp Feature: domain Description: Intron_maturas2 Location: 6430-6688 bp Feature: domain Description: Intron_maturas2 Location: 6430-6688 bp Feature: domain Description: HNHc Note: nucleases Location: 6862-7024 bp Feature: domain Description: HNHc Note: nucleases Location: 6862-7024 bp Feature: gene Location: 7302-8591 bp Feature: gene Location: 8644-9078 bp Ori: ATM79433.1 Gene: psiB Feature: domain Description: psiB Location: 8647-9073 bp Feature: domain Description: psiB Location: 8647-9073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)

Seq: CP023960.1 Escherichia coli strain FDAARGOS_448 chromosome, complete genome (5169451 bp)
Overview 1 RT 1: 1661124-1665710 bp 2 RT 2: 2370798-2377178 bp 3 RT 3: 3016842-3022182 bp Neighborhood of RT #1 [1661124, 1665710] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [2370798, 2377178] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Neighborhood of RT #3 [3016842, 3022205] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 1661124-1662158 bp Ori: ATM81136.1 Feature: domain Description: Q Location: 1661127-1662150 bp Feature: domain Description: Q Location: 166112 7-1662 150 bp Feature: gene Location: 1662671-1664035 bp Ori: ATM81137.1 Feature: domain Description: FRG Location: 1663238-1663523 bp Feature: domain Description: FRG Location: 16632 38-166352 3 bp Feature: gene Location: 1664144-1665094 bp Ori: ATM81138.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1664324-1664867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 166432 4-1664867 bp Feature: gene Location: 1665060-1665380 bp Ori: ATM81139.1 Feature: domain Description: HTH_XRE Location: 1665075-1665234 bp Feature: domain Description: HTH_XRE Location: 1665075-16652 34 bp Feature: gene Location: 1665417-1665710 bp Feature: gene Location: 2370798-2371718 bp Ori: ATM81753.1 Feature: domain Description: AbiEii Location: 2370840-2371581 bp Feature: domain Description: AbiEii Location: 2 370840-2 371581 bp Feature: gene Location: 2371705-2372508 bp Ori: ATM81754.1 Feature: domain Description: AbiEi_3_N Location: 2371738-2371999 bp Feature: domain Description: AbiEi_3_N Location: 2 371738-2 371999 bp Feature: domain Description: AbiEi_3 Location: 2372011-2372467 bp Feature: domain Description: AbiEi_3 Location: 2 372 011-2 372 467 bp Feature: gene Location: 2372803-2376012 bp Ori: ATM81755.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2373331-2373820 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 373331-2 37382 0 bp Feature: domain Description: nitrilase Location: 2375326-2375923 bp Feature: domain Description: nitrilase Location: 2 37532 6-2 37592 3 bp Feature: gene Location: 2376359-2376829 bp Feature: gene Location: 2377020-2377178 bp Feature: gene Location: 3016842-3017747 bp Feature: gene Location: 3017721-3018008 bp Feature: gene Location: 3018233-3018772 bp Ori: ATM82340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3018563-3018641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3018563-3018641 bp Feature: gene Location: 3018800-3019321 bp Ori: ATM82341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3018806-3019088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3018806-3019088 bp Feature: domain Description: GIIM Note: maturase Location: 3019136-3019316 bp Feature: domain Description: GIIM Note: maturase Location: 3019136-3019316 bp Feature: gene Location: 3019904-3021133 bp Ori: ATM84408.1 Feature: domain Description: YesM Location: 3020384-3021125 bp Feature: domain Description: YesM Location: 302 0384-302 112 5 bp Feature: gene Location: 3021150-3022205 bp Ori: ATM82342.1 Feature: domain Description: YesN Location: 3021153-3021543 bp Feature: domain Description: YesN Location: 302 1153-302 1543 bp Feature: domain Description: YesN Location: 3021885-3022182 bp Feature: domain Description: YesN Location: 302 1885-302 2 182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), RVT-GII
GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: CP023959.1 Escherichia coli strain FDAARGOS_448 plasmid unnamed1, complete sequence (128761 bp)
Overview 1 RT 1: 121052-124396 bp Neighborhood of RT #1 [121052, 124398] ParE RVT-GII GIIM PRK15442 Feature: gene Location: 121052-121333 bp Feature: domain Description: ParE Location: 121055-121331 bp Feature: domain Description: ParE Location: 121055-1213 3 1 bp Feature: gene Location: 121330-121485 bp Feature: gene Location: 121589-122921 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121874-122561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121874-122561 bp Feature: domain Description: GIIM Note: maturase Location: 122678-122846 bp Feature: domain Description: GIIM Note: maturase Location: 122678-122846 bp Feature: gene Location: 122932-123204 bp Feature: gene Location: 123538-124398 bp Ori: ATM79557.1 Feature: domain Description: PRK15442 Location: 123547-124396 bp Feature: domain Description: PRK15442 Location: 123 547-1243 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-GII, GIIM (pfam08388), PRK15442 (beta-lactamase TEM; Provisional)