myRT

myRT report for GCA_002591235.1_ASM259123v1

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Seq: CP023969.1 Pseudomonas sp. FDAARGOS_380 chromosome, complete genome (6499364 bp)
Overview 1 RT 1: 839534-844776 bp 2 RT 2: 1796801-1802563 bp 3 RT 3: 2856954-2867004 bp 4 RT 4: 3063995-3069133 bp Neighborhood of RT #1 [839534, 844805] ACR3 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #2 [1796801, 1802563] CRISPR_Cas2 RVT-Retrons Neighborhood of RT #3 [2856954, 2867048] HTH_XRE ImmA KAP_NTPase RVT-UG5 nitrilase INT_RitA_C_like AAA_13 Neighborhood of RT #4 [3063995, 3069133] ArgO RVT-Retrons ABC_ATPase Feature: gene Location: 839534-840496 bp Ori: ATN08876.1 Feature: domain Description: ACR3 Location: 839549-840476 bp Feature: domain Description: ACR3 Location: 839549-840476 bp Feature: gene Location: 840535-840756 bp Feature: domain Description: DDE_Tnp_IS66 Location: 840541-840607 bp Feature: domain Description: DDE_Tnp_IS66 Location: 840541 -840607 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 840628-840739 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 840628-840739 bp Feature: gene Location: 840861-842522 bp Ori: ATN08877.1 Gene: ltrA Feature: domain Description: RVT_N Location: 840906-841149 bp Feature: domain Description: RVT_N Location: 840906-841 1 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841194-841830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 1 94-841 830 bp Feature: domain Description: GIIM Note: maturase Location: 841887-842115 bp Feature: domain Description: GIIM Note: maturase Location: 841 887-8421 1 5 bp Feature: gene Location: 843101-844408 bp Feature: domain Description: LZ_Tnp_IS66 Location: 843233-843440 bp Feature: domain Description: LZ_Tnp_IS66 Location: 843233-843440 bp Feature: domain Description: zf-IS66 Location: 843479-843593 bp Feature: domain Description: zf-IS66 Location: 843479-843593 bp Feature: domain Description: DDE_Tnp_IS66 Location: 843635-844409 bp Feature: domain Description: DDE_Tnp_IS66 Location: 843635-844409 bp Feature: gene Location: 844470-844805 bp Ori: ATN08878.1 Feature: domain Description: TnpB_IS66 Location: 844488-844776 bp Feature: domain Description: TnpB_IS66 Location: 844488-844776 bp Feature: gene Location: 1796801-1797073 bp Ori: ATN09685.1 Feature: domain Description: CRISPR_Cas2 Location: 1796816-1797014 bp Feature: domain Description: CRISPR_Cas2 Location: 1 79681 6-1 79701 4 bp Feature: gene Location: 1797137-1797511 bp Feature: gene Location: 1797919-1799625 bp Ori: ATN09687.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1798069-1798666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 798069-1 798666 bp Feature: gene Location: 1800044-1800834 bp Feature: gene Location: 1800839-1802563 bp Feature: gene Location: 2856954-2858105 bp Ori: ATN10609.1 Feature: domain Description: HTH_XRE Location: 2856975-2857131 bp Feature: domain Description: HTH_XRE Location: 2856975-28571 31 bp Feature: domain Description: ImmA Location: 2857389-2857920 bp Feature: domain Description: ImmA Location: 2857389-2857920 bp Feature: gene Location: 2858164-2860449 bp Ori: ATN10610.1 Feature: domain Description: KAP_NTPase Location: 2858332-2859064 bp Feature: domain Description: KAP_NTPase Location: 2858332-2859064 bp Feature: gene Location: 2860533-2863547 bp Ori: ATN10611.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2861010-2861502 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2861 01 0-2861 502 bp Feature: domain Description: nitrilase Location: 2862753-2863443 bp Feature: domain Description: nitrilase Location: 2862753-2863443 bp Feature: gene Location: 2863749-2864369 bp Ori: ATN10612.1 Feature: domain Description: INT_RitA_C_like Location: 2863827-2864355 bp Feature: domain Description: INT_RitA_C_like Location: 2863827-2864355 bp Feature: gene Location: 2864895-2867048 bp Ori: ATN10613.1 Feature: domain Description: AAA_13 Location: 2864949-2867004 bp Feature: domain Description: AAA_1 3 Location: 2864949-2867004 bp Feature: gene Location: 3063995-3064633 bp Ori: ATN10779.1 Feature: domain Description: ArgO Location: 3064019-3064601 bp Feature: domain Description: ArgO Location: 306401 9-3064601 bp Feature: gene Location: 3064604-3064933 bp Feature: gene Location: 3065864-3066820 bp Ori: ATN10781.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3065966-3066533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3065966-3066533 bp Feature: gene Location: 3066820-3068175 bp Ori: ATN13745.1 Feature: domain Description: ABC_ATPase Location: 3066871-3067570 bp Feature: domain Description: ABC_ATPase Location: 3066871 -3067570 bp Feature: gene Location: 3068657-3069133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), TnpB_IS66 (pfam05717), CRISPR_Cas2 (pfam09827)
RVT-Retrons, HTH_XRE (smart00530), ImmA (COG2856), KAP_NTPase (pfam07693), RVT-UG5, nitrilase (cl11424), INT_RitA_C_like (cd01188), AAA_13 (pfam13166), ArgO (COG1279), ABC_ATPase (pfam09818)