myRT

myRT report for GCA_002734145.1_ASM273414v1

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Seq: CP022479.1 Faecalibacterium prausnitzii strain A2165 chromosome, complete genome (3110044 bp)
Overview 1 RT 1: 27558-31717 bp 2 RT 2: 423679-429371 bp 3 RT 3: 458107-461976 bp 4 RT 4: 792952-796227 bp 5 RT 5: 2319252-2325304 bp 6 RT 6: 2775140-2780254 bp 7 RT 7: 3010486-3014704 bp Neighborhood of RT #1 [27558, 31722] PrgI TrbL RVT-GII Maff2 Neighborhood of RT #2 [423679, 429371] Eco57I HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Neighborhood of RT #3 [458107, 462092] Maff2 RVT-GII Intron_maturas2 HNHc PrgI Neighborhood of RT #4 [792952, 796766] RVT-DGRs Avd_like pfam03781 Neighborhood of RT #5 [2319252, 2325699] PrgI RVT-GII HNHc TraC-F-type Cyt_C5_DNA_methylase Neighborhood of RT #6 [2775140, 2780406] TnpV YozG RVT-GII HNHc Maff2 T4SS-DNA_transf Neighborhood of RT #7 [3010486, 3014704] bZIP_2 RVT-DGRs Avd_like Feature: gene Location: 27558-27983 bp Ori: ATO98447.1 Feature: domain Description: PrgI Location: 27576-27846 bp Feature: domain Description: PrgI Location: 27576-27846 bp Feature: gene Location: 28004-28306 bp Ori: ATO98448.1 Feature: domain Description: TrbL Location: 28028-28265 bp Feature: domain Description: TrbL Location: 28028-28265 bp Feature: gene Location: 28382-30213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28646-29093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28646-29093 bp Feature: gene Location: 30789-31454 bp Feature: gene Location: 31558-31722 bp Feature: domain Description: Maff2 Location: 31627-31717 bp Feature: domain Description: Maff2 Location: 31 627-31 71 7 bp Feature: gene Location: 423679-425589 bp Ori: ATO98814.1 Feature: domain Description: Eco57I Location: 424537-424828 bp Feature: domain Description: Eco57I Location: 424537-424828 bp Feature: gene Location: 425889-426191 bp Ori: ATO98815.1 Feature: domain Description: HTH_XRE Location: 425898-426069 bp Feature: domain Description: HTH_XRE Location: 425898-426069 bp Feature: gene Location: 426250-427566 bp Ori: ATO98816.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 426448-427279 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 426448-427279 bp Feature: gene Location: 427962-428984 bp Ori: ATO98817.1 Feature: domain Description: CxxCG_CxxCG_HTH Location: 428013-428388 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 42801 3-428388 bp Feature: domain Description: GepA Location: 428526-428913 bp Feature: domain Description: GepA Location: 428526-42891 3 bp Feature: gene Location: 428985-429371 bp Feature: gene Location: 458107-458190 bp Feature: domain Description: Maff2 Location: 458110-458185 bp Feature: domain Description: Maff2 Location: 4581 1 0-4581 85 bp Feature: gene Location: 458209-458880 bp Feature: gene Location: 459456-461288 bp Ori: ATO98854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459720-460551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459720-460551 bp Feature: domain Description: Intron_maturas2 Location: 460623-460938 bp Feature: domain Description: Intron_maturas2 Location: 460623-460938 bp Feature: domain Description: HNHc Note: nucleases Location: 461085-461259 bp Feature: domain Description: HNHc Note: nucleases Location: 461 085-461 259 bp Feature: gene Location: 461364-461666 bp Feature: gene Location: 461688-462092 bp Ori: ATO98856.1 Feature: domain Description: PrgI Location: 461703-461976 bp Feature: domain Description: PrgI Location: 461 703-461 976 bp Feature: gene Location: 792952-793332 bp Feature: gene Location: 793345-793701 bp Feature: gene Location: 793680-794993 bp Ori: ATO99149.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 794061-794727 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 794061 -794727 bp Feature: gene Location: 795253-795597 bp Ori: ATO99150.1 Feature: domain Description: Avd_like Location: 795277-795589 bp Feature: domain Description: Avd_like Location: 795277-795589 bp Feature: gene Location: 795669-796766 bp Ori: ATO99151.1 Feature: domain Description: pfam03781 Location: 795909-796227 bp Feature: domain Description: pfam03781 Location: 795909-796227 bp Feature: gene Location: 2319252-2319677 bp Ori: ATP00482.1 Feature: domain Description: PrgI Location: 2319270-2319540 bp Feature: domain Description: PrgI Location: 231 9270-231 9540 bp Feature: gene Location: 2319604-2320626 bp Feature: gene Location: 2321312-2323285 bp Ori: ATP00483.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321648-2322386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321 648-2322386 bp Feature: domain Description: HNHc Note: nucleases Location: 2322935-2323106 bp Feature: domain Description: HNHc Note: nucleases Location: 2322935-23231 06 bp Feature: gene Location: 2323367-2324809 bp Feature: domain Description: TraC-F-type Location: 2323400-2324678 bp Feature: domain Description: TraC-F-type Location: 2323400-2324678 bp Feature: gene Location: 2324806-2325699 bp Ori: ATP00484.1 Feature: domain Description: Cyt_C5_DNA_methylase Location: 2324821-2325304 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 2324821 -2325304 bp Feature: gene Location: 2775140-2775517 bp Ori: ATP00867.1 Feature: domain Description: TnpV Location: 2775185-2775509 bp Feature: domain Description: TnpV Location: 27751 85-2775509 bp Feature: gene Location: 2775477-2775749 bp Ori: ATP00868.1 Feature: domain Description: YozG Location: 2775486-2775687 bp Feature: domain Description: YozG Location: 2775486-2775687 bp Feature: gene Location: 2776103-2777980 bp Ori: ATP00869.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776430-2777168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776430-27771 68 bp Feature: domain Description: HNHc Note: nucleases Location: 2777705-2777867 bp Feature: domain Description: HNHc Note: nucleases Location: 2777705-2777867 bp Feature: gene Location: 2778695-2778826 bp Ori: ATP00870.1 Feature: domain Description: Maff2 Location: 2778698-2778821 bp Feature: domain Description: Maff2 Location: 2778698-2778821 bp Feature: gene Location: 2778967-2780406 bp Ori: ATP00871.1 Feature: domain Description: T4SS-DNA_transf Location: 2779054-2780254 bp Feature: domain Description: T4SS-DNA_transf Location: 2779054-2780254 bp Feature: gene Location: 3010486-3010689 bp Ori: ATP01043.1 Feature: domain Description: bZIP_2 Location: 3010543-3010630 bp Feature: domain Description: bZIP_2 Location: 301 0543-301 0630 bp Feature: gene Location: 3010682-3012406 bp Feature: gene Location: 3012450-3013703 bp Ori: ATP01044.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3012750-3013395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 301 2750-301 3395 bp Feature: gene Location: 3014062-3014421 bp Ori: ATP01045.1 Feature: domain Description: Avd_like Location: 3014113-3014398 bp Feature: domain Description: Avd_like Location: 301 41 1 3-301 4398 bp Feature: gene Location: 3014387-3014704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TrbL (pfam04610), RVT-GII, Maff2 (pfam12750), Eco57I (pfam07669), HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600), Intron_maturas2 (pfam01348)
HNHc (smart00507), RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), TraC-F-type (TIGR02746), Cyt_C5_DNA_methylase (cl30459), TnpV (pfam14198), YozG (COG3655), T4SS-DNA_transf (pfam02534), bZIP_2 (pfam07716)