myRT

myRT report for GCA_002736265.1_ASM273626v1

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Seq: CP024126.1 Streptococcus suis strain HA0609 chromosome, complete genome (2247350 bp)
Overview 1 RT 1: 1051582-1059781 bp 2 RT 2: 1106303-1115749 bp 3 RT 3: 1123338-1131045 bp 4 RT 4: 1424999-1433814 bp 5 RT 5: 1441231-1447318 bp 6 RT 6: 1930089-1933660 bp Neighborhood of RT #1 [1051582, 1059876] PRK08581 TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE VirB4_CagE AAA_10 PrgI Neighborhood of RT #2 [1106303, 1115892] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #3 [1123338, 1131113] PRK06149 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM PrgI Neighborhood of RT #4 [1424999, 1433816] Cas1_II Csn1 CRISPR_Cas9_WED Cas9_PI2 RVT_N RVT-GII GIIM cas_Csn1 MnmE Neighborhood of RT #5 [1441231, 1447329] PRK13628 RVT_N RVT-GII GIIM Methyltransf_11 Uup Neighborhood of RT #6 [1930089, 1933695] PaaD RVT_N RVT-GII GIIM COG5015 Feature: gene Location: 1051582-1054803 bp Ori: AUW25961.1 Feature: domain Description: PRK08581 Location: 1054462-1054792 bp Feature: domain Description: PRK08581 Location: 1 054462-1 054792 bp Feature: gene Location: 1054811-1055860 bp Ori: AUW25962.1 Feature: domain Description: TraC-F-type Location: 1054952-1055735 bp Feature: domain Description: TraC-F-type Location: 1 054952-1 055735 bp Feature: gene Location: 1055808-1057481 bp Ori: AUW25963.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1055880-1056120 bp Feature: domain Description: RVT_N Location: 1 055880-1 0561 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056168-1056828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0561 68-1 056828 bp Feature: domain Description: GIIM Note: maturase Location: 1056897-1057116 bp Feature: domain Description: GIIM Note: maturase Location: 1 056897-1 0571 1 6 bp Feature: gene Location: 1058010-1059551 bp Ori: AUW25964.1 Feature: domain Description: VirB4_CagE Location: 1058169-1058340 bp Feature: domain Description: VirB4_CagE Location: 1 0581 69-1 058340 bp Feature: domain Description: VirB4_CagE Location: 1058742-1059312 bp Feature: domain Description: VirB4_CagE Location: 1 058742-1 05931 2 bp Feature: domain Description: AAA_10 Location: 1059390-1059537 bp Feature: domain Description: AAA_1 0 Location: 1 059390-1 059537 bp Feature: gene Location: 1059508-1059876 bp Ori: AUW25965.1 Feature: domain Description: PrgI Location: 1059523-1059781 bp Feature: domain Description: PrgI Location: 1 059523-1 059781 bp Feature: gene Location: 1106303-1106602 bp Feature: gene Location: 1106673-1108061 bp Feature: domain Description: KOG1000 Location: 1106997-1107312 bp Feature: domain Description: KOG1 000 Location: 1 1 06997-1 1 0731 2 bp Feature: gene Location: 1108154-1109932 bp Ori: AUW26016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108415-1109207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0841 5-1 1 09207 bp Feature: domain Description: Intron_maturas2 Location: 1109312-1109543 bp Feature: domain Description: Intron_maturas2 Location: 1 1 0931 2-1 1 09543 bp Feature: domain Description: HNHc Note: nucleases Location: 1109708-1109894 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 09708-1 1 09894 bp Feature: gene Location: 1110331-1110456 bp Feature: gene Location: 1110430-1115892 bp Ori: AUW26017.1 Feature: domain Description: N6_Mtase Location: 1112446-1113034 bp Feature: domain Description: N6_Mtase Location: 1 1 1 2446-1 1 1 3034 bp Feature: domain Description: COG4646 Location: 1113625-1115749 bp Feature: domain Description: COG4646 Location: 1 1 1 3625-1 1 1 5749 bp Feature: gene Location: 1123338-1126139 bp Ori: AUW26023.1 Feature: domain Description: PRK06149 Location: 1124763-1125024 bp Feature: domain Description: PRK061 49 Location: 1 1 24763-1 1 25024 bp Feature: domain Description: Phage_lysozyme2 Location: 1125135-1125648 bp Feature: domain Description: Phage_lysozyme2 Location: 1 1 251 35-1 1 25648 bp Feature: domain Description: PRK08581 Location: 1125765-1126101 bp Feature: domain Description: PRK08581 Location: 1 1 25765-1 1 261 01 bp Feature: gene Location: 1126141-1127103 bp Ori: AUW26024.1 Feature: domain Description: TraC-F-type Location: 1126234-1126930 bp Feature: domain Description: TraC-F-type Location: 1 1 26234-1 1 26930 bp Feature: gene Location: 1127108-1128781 bp Ori: AUW26025.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1127180-1127420 bp Feature: domain Description: RVT_N Location: 1 1 271 80-1 1 27420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1127468-1128128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 27468-1 1 281 28 bp Feature: domain Description: GIIM Note: maturase Location: 1128197-1128416 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 281 97-1 1 2841 6 bp Feature: gene Location: 1129310-1130782 bp Feature: gene Location: 1130760-1131113 bp Ori: AUW26027.1 Feature: domain Description: PrgI Location: 1130772-1131045 bp Feature: domain Description: PrgI Location: 1 1 30772-1 1 31 045 bp Feature: gene Location: 1424999-1425913 bp Ori: AUW26299.1 Feature: domain Description: Cas1_II Location: 1425008-1425833 bp Feature: domain Description: Cas1 _II Location: 1 425008-1 425833 bp Feature: gene Location: 1426080-1427684 bp Gene: cas9 Feature: domain Description: Csn1 Location: 1426083-1426716 bp Feature: domain Description: Csn1 Location: 1 426083-1 42671 6 bp Feature: domain Description: CRISPR_Cas9_WED Location: 1426785-1427196 bp Feature: domain Description: CRISPR_Cas9_WED Location: 1 426785-1 4271 96 bp Feature: domain Description: Cas9_PI2 Location: 1427208-1427388 bp Feature: domain Description: Cas9_PI2 Location: 1 427208-1 427388 bp Feature: gene Location: 1428236-1429909 bp Ori: AUW26300.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1428308-1428548 bp Feature: domain Description: RVT_N Location: 1 428308-1 428548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428596-1429256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 428596-1 429256 bp Feature: domain Description: GIIM Note: maturase Location: 1429325-1429544 bp Feature: domain Description: GIIM Note: maturase Location: 1 429325-1 429544 bp Feature: gene Location: 1429996-1431759 bp Gene: cas9 Feature: domain Description: cas_Csn1 Location: 1430014-1431760 bp Feature: domain Description: cas_Csn1 Location: 1 43001 4-1 431 760 bp Feature: gene Location: 1432443-1433816 bp Ori: AUW26301.1 Feature: domain Description: MnmE Location: 1432455-1433814 bp Feature: domain Description: MnmE Location: 1 432455-1 43381 4 bp Feature: gene Location: 1441231-1442436 bp Ori: AUW26309.1 Feature: domain Description: PRK13628 Location: 1441237-1442422 bp Feature: domain Description: PRK1 3628 Location: 1 441 237-1 442422 bp Feature: gene Location: 1442599-1442748 bp Feature: gene Location: 1442834-1444507 bp Ori: AUW26310.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1442906-1443146 bp Feature: domain Description: RVT_N Location: 1 442906-1 4431 46 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443194-1443854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4431 94-1 443854 bp Feature: domain Description: GIIM Note: maturase Location: 1443923-1444142 bp Feature: domain Description: GIIM Note: maturase Location: 1 443923-1 4441 42 bp Feature: gene Location: 1445060-1445557 bp Feature: domain Description: Methyltransf_11 Location: 1445123-1445411 bp Feature: domain Description: Methyltransf_1 1 Location: 1 4451 23-1 44541 1 bp Feature: gene Location: 1445785-1447329 bp Ori: AUW26311.1 Feature: domain Description: Uup Location: 1445788-1447318 bp Feature: domain Description: Uup Location: 1 445788-1 44731 8 bp Feature: gene Location: 1930089-1930475 bp Feature: gene Location: 1930502-1930756 bp Feature: domain Description: PaaD Location: 1930508-1930736 bp Feature: domain Description: PaaD Location: 1 930508-1 930736 bp Feature: gene Location: 1930836-1932509 bp Ori: AUW26764.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1930908-1931148 bp Feature: domain Description: RVT_N Location: 1 930908-1 931 1 48 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931196-1931856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 1 96-1 931 856 bp Feature: domain Description: GIIM Note: maturase Location: 1931925-1932144 bp Feature: domain Description: GIIM Note: maturase Location: 1 931 925-1 9321 44 bp Feature: gene Location: 1933062-1933154 bp Feature: gene Location: 1933276-1933695 bp Ori: AUW26765.1 Feature: domain Description: COG5015 Location: 1933285-1933660 bp Feature: domain Description: COG501 5 Location: 1 933285-1 933660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), PrgI (pfam12666), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Intron_maturas2 (pfam01348)
HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), PRK06149 (aminotransferase), Phage_lysozyme2 (pfam18013), Cas1_II (cd09720), Csn1 (cd09643), CRISPR_Cas9_WED (pfam18061), Cas9_PI2 (pfam18070), cas_Csn1 (TIGR01865)
MnmE (COG0486), PRK13628 (serine/threonine transporter SstT; Provisional), Methyltransf_11 (pfam08241), Uup (COG0488), PaaD (TIGR02286), COG5015 (Uncharacterized protein, pyridoxamine 5'-phosphate oxidase (PNPOx-like) family )