myRT

myRT report for GCA_002741015.1_ASM274101v1

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Seq: CP016618.1 Microvirga sp. V5/3M plasmid unnamed3, complete sequence (712299 bp)
Overview 1 RT 1: 213165-218346 bp Neighborhood of RT #1 [213165, 218438] Transposase_mut RVT-GII Rve zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 213165-214181 bp Ori: ANY83484.1 Feature: domain Description: Transposase_mut Location: 213798-214038 bp Feature: domain Description: Transposase_mut Location: 21 3798-21 4038 bp Feature: gene Location: 214178-214760 bp Feature: gene Location: 214782-216460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214923-215358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4923-21 5358 bp Feature: gene Location: 216569-217057 bp Ori: ANY83485.1 Feature: domain Description: Rve Location: 216602-217001 bp Feature: domain Description: Rve Location: 21 6602-21 7001 bp Feature: gene Location: 217155-218438 bp Ori: ANY83486.1 Feature: domain Description: zf-IS66 Location: 217377-217521 bp Feature: domain Description: zf-IS66 Location: 21 7377-21 7521 bp Feature: domain Description: DDE_Tnp_IS66 Location: 217566-218346 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 7566-21 8346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, Rve (COG3316), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: CP016619.1 Microvirga sp. V5/3M plasmid unnamed2, complete sequence (977332 bp)
Overview 1 RT 1: 385228-391678 bp 2 RT 2: 517873-523688 bp 3 RT 3: 537981-544868 bp 4 RT 4: 629974-636016 bp 5 RT 5: 763556-770690 bp Neighborhood of RT #1 [385228, 391686] RVT-GII GIIM YktD PHA_synth_I Neighborhood of RT #2 [517873, 523759] Dcg1 GntR group_II_RT_mat RVT-GII GIIM KOG2665 PRK13404 Neighborhood of RT #3 [537981, 544870] Phage_int_SAM_4 INT_IntI_C Cadherin_repeat HemolysinCabind RVT-GII GIIM PntB Neighborhood of RT #4 [629974, 636078] COG4279 RpoE RVT-GII GIIM COG5659 PRK09145 Neighborhood of RT #5 [763556, 770701] RspA DDE_5 RVT-GII GIIM MFS_MosC_like GlnQ Feature: gene Location: 385228-385530 bp Feature: gene Location: 385609-385899 bp Feature: gene Location: 386462-387802 bp Ori: ANY84268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386762-387425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386762 -38742 5 bp Feature: domain Description: GIIM Note: maturase Location: 387494-387707 bp Feature: domain Description: GIIM Note: maturase Location: 387494-387707 bp Feature: gene Location: 388919-389779 bp Ori: ANY84269.1 Feature: domain Description: YktD Location: 388952-389633 bp Feature: domain Description: YktD Location: 388952 -389633 bp Feature: gene Location: 389866-391686 bp Ori: ANY84270.1 Feature: domain Description: PHA_synth_I Location: 390085-391678 bp Feature: domain Description: PHA_synth_I Location: 390085-391678 bp Feature: gene Location: 517873-518532 bp Ori: ANY84389.1 Feature: domain Description: Dcg1 Location: 517882-518509 bp Feature: domain Description: Dcg1 Location: 517882 -518509 bp Feature: gene Location: 518778-519434 bp Ori: ANY84805.1 Feature: domain Description: GntR Location: 518784-519405 bp Feature: domain Description: GntR Location: 518784-519405 bp Feature: gene Location: 519955-520827 bp Ori: ANY84390.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 520078-520270 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 52 0078-52 02 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520279-520447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 02 79-52 0447 bp Feature: domain Description: GIIM Note: maturase Location: 520519-520735 bp Feature: domain Description: GIIM Note: maturase Location: 52 0519-52 0735 bp Feature: gene Location: 521164-522250 bp Feature: domain Description: KOG2665 Location: 521170-521653 bp Feature: domain Description: KOG2 665 Location: 52 1170-52 1653 bp Feature: gene Location: 522278-523759 bp Ori: ANY84391.1 Feature: domain Description: PRK13404 Location: 522290-523688 bp Feature: domain Description: PRK13404 Location: 52 2 2 90-52 3688 bp Feature: gene Location: 537981-538880 bp Ori: ANY84404.1 Feature: domain Description: Phage_int_SAM_4 Location: 538011-538248 bp Feature: domain Description: Phage_int_SAM_4 Location: 538011-5382 48 bp Feature: domain Description: INT_IntI_C Location: 538290-538797 bp Feature: domain Description: INT_IntI_C Location: 5382 90-538797 bp Feature: gene Location: 539185-541611 bp Ori: ANY84405.1 Feature: domain Description: Cadherin_repeat Location: 540910-541168 bp Feature: domain Description: Cadherin_repeat Location: 540910-541168 bp Feature: domain Description: HemolysinCabind Location: 541192-541291 bp Feature: domain Description: HemolysinCabind Location: 541192 -5412 91 bp Feature: gene Location: 542086-543417 bp Ori: ANY84406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542377-543040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 377-543040 bp Feature: domain Description: GIIM Note: maturase Location: 543112-543322 bp Feature: domain Description: GIIM Note: maturase Location: 543112 -54332 2 bp Feature: gene Location: 544052-544550 bp Feature: gene Location: 544640-544870 bp Ori: ANY84407.1 Feature: domain Description: PntB Location: 544643-544868 bp Feature: domain Description: PntB Location: 544643-544868 bp Feature: gene Location: 629974-631059 bp Ori: ANY84483.1 Feature: domain Description: COG4279 Location: 630115-630610 bp Feature: domain Description: COG42 79 Location: 630115-630610 bp Feature: gene Location: 631164-631601 bp Ori: ANY84484.1 Feature: domain Description: RpoE Location: 631455-631587 bp Feature: domain Description: RpoE Location: 631455-631587 bp Feature: gene Location: 632100-633440 bp Ori: ANY84485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632400-633063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 400-633063 bp Feature: domain Description: GIIM Note: maturase Location: 633135-633345 bp Feature: domain Description: GIIM Note: maturase Location: 633135-633345 bp Feature: gene Location: 634155-635318 bp Feature: domain Description: COG5659 Location: 634179-635307 bp Feature: domain Description: COG5659 Location: 634179-635307 bp Feature: gene Location: 635410-636078 bp Ori: ANY84486.1 Feature: domain Description: PRK09145 Location: 635413-636016 bp Feature: domain Description: PRK09145 Location: 635413-636016 bp Feature: gene Location: 763556-764758 bp Ori: ANY84599.1 Feature: domain Description: RspA Location: 763559-764729 bp Feature: domain Description: RspA Location: 763559-76472 9 bp Feature: gene Location: 765078-766212 bp Feature: domain Description: DDE_5 Location: 765144-765315 bp Feature: domain Description: DDE_5 Location: 765144-765315 bp Feature: gene Location: 766806-768137 bp Ori: ANY84600.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767097-767760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767097-767760 bp Feature: domain Description: GIIM Note: maturase Location: 767832-768042 bp Feature: domain Description: GIIM Note: maturase Location: 767832 -768042 bp Feature: gene Location: 768475-769641 bp Ori: ANY84823.1 Feature: domain Description: MFS_MosC_like Location: 768535-769621 bp Feature: domain Description: MFS_MosC_like Location: 768535-76962 1 bp Feature: gene Location: 769931-770701 bp Ori: ANY84601.1 Gene: glnQ Feature: domain Description: GlnQ Location: 769976-770690 bp Feature: domain Description: GlnQ Location: 769976-770690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YktD (COG3315), PHA_synth_I, Dcg1 (COG4126), GntR (pfam00392), group_II_RT_mat (TIGR04416), KOG2665 (KOG2665, Predicted FAD-dependent oxidoreductase ), PRK13404 (dihydropyrimidinase; Provisional), Phage_int_SAM_4 (pfam13495)
INT_IntI_C (cd01193), Cadherin_repeat (cd11304), HemolysinCabind (pfam00353), PntB (COG1282), COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), RpoE (COG3343), COG5659 (SRSO17 transposase ), PRK09145 (3'-5' exonuclease), RspA (COG4948), DDE_5 (pfam13546)
MFS_MosC_like (cd17393), GlnQ (COG1126)

Seq: CP016616.1 Microvirga ossetica strain V5/3M chromosome, complete genome (5843140 bp)
Overview 1 RT 1: 3017257-3022831 bp 2 RT 2: 5436444-5441811 bp 3 RT 3: 5490811-5497250 bp Neighborhood of RT #1 [3017257, 3023184] AhpC-TSA AcrR RVT-GII GIIM DUF805 DUF805 Neighborhood of RT #2 [5436444, 5441834] RVT-GII GIIM DUF3597 DOPA_deC_like Neighborhood of RT #3 [5490811, 5497270] PAS_3 COG3920 RVT-GII GIIM ABC_sub_bind COG4191 FixJ Feature: gene Location: 3017257-3017775 bp Ori: ANY79222.1 Feature: domain Description: AhpC-TSA Location: 3017335-3017665 bp Feature: domain Description: AhpC-TSA Location: 3 0173 3 5-3 017665 bp Feature: gene Location: 3018917-3019483 bp Ori: ANY79223.1 Feature: domain Description: AcrR Location: 3018935-3019472 bp Feature: domain Description: AcrR Location: 3 01893 5-3 019472 bp Feature: gene Location: 3020147-3021478 bp Ori: ANY79224.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3020438-3021101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 02043 8-3 021101 bp Feature: domain Description: GIIM Note: maturase Location: 3021173-3021383 bp Feature: domain Description: GIIM Note: maturase Location: 3 021173 -3 0213 83 bp Feature: gene Location: 3021770-3022003 bp Feature: gene Location: 3022072-3023184 bp Ori: ANY79226.1 Feature: domain Description: DUF805 Location: 3022096-3022384 bp Feature: domain Description: DUF805 Location: 3 022096-3 0223 84 bp Feature: domain Description: DUF805 Location: 3022561-3022831 bp Feature: domain Description: DUF805 Location: 3 022561-3 02283 1 bp Feature: gene Location: 5436444-5436764 bp Feature: gene Location: 5437390-5437584 bp Feature: gene Location: 5437930-5439270 bp Ori: ANY81181.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5438230-5438893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543 823 0-543 8893 bp Feature: domain Description: GIIM Note: maturase Location: 5438962-5439175 bp Feature: domain Description: GIIM Note: maturase Location: 543 8962-543 9175 bp Feature: gene Location: 5439919-5440350 bp Ori: ANY81182.1 Feature: domain Description: DUF3597 Location: 5439928-5440333 bp Feature: domain Description: DUF3 597 Location: 543 9928-54403 3 3 bp Feature: gene Location: 5440455-5441834 bp Ori: ANY81183.1 Feature: domain Description: DOPA_deC_like Location: 5440689-5441811 bp Feature: domain Description: DOPA_deC_like Location: 5440689-5441811 bp Feature: gene Location: 5490811-5491815 bp Ori: ANY81218.1 Feature: domain Description: PAS_3 Location: 5490922-5491135 bp Feature: domain Description: PAS_3 Location: 5490922-549113 5 bp Feature: domain Description: COG3920 Location: 5491195-5491801 bp Feature: domain Description: COG3 920 Location: 5491195-5491801 bp Feature: gene Location: 5492198-5492434 bp Feature: gene Location: 5493184-5494512 bp Ori: ANY81220.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5493478-5494135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5493 478-549413 5 bp Feature: domain Description: GIIM Note: maturase Location: 5494204-5494420 bp Feature: domain Description: GIIM Note: maturase Location: 5494204-5494420 bp Feature: gene Location: 5494944-5496851 bp Ori: ANY81221.1 Feature: domain Description: ABC_sub_bind Location: 5495238-5495895 bp Feature: domain Description: ABC_sub_bind Location: 549523 8-5495895 bp Feature: domain Description: COG4191 Location: 5496099-5496849 bp Feature: domain Description: COG4191 Location: 5496099-5496849 bp Feature: gene Location: 5496875-5497270 bp Ori: ANY81222.1 Feature: domain Description: FixJ Location: 5496905-5497250 bp Feature: domain Description: FixJ Location: 5496905-5497250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AhpC-TSA (pfam00578), AcrR (COG1309), RVT-GII, GIIM (pfam08388), DUF805 (pfam05656), DUF3597 (pfam12200), DOPA_deC_like (cd06450), PAS_3 (pfam08447), COG3920 (Two-component sensor histidine kinase, HisKA and HATPase domains ), ABC_sub_bind (pfam04392)
COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), FixJ (COG4566)

Seq: CP016617.1 Microvirga sp. V5/3M plasmid unnamed1, complete sequence (1343367 bp)
Overview 1 RT 1: 145835-152984 bp 2 RT 2: 1110075-1115993 bp 3 RT 3: 1275309-1282632 bp 4 RT 4: 1318951-1324885 bp Neighborhood of RT #1 [145835, 153046] COG3293 COG3293 DUF772 RVT-GII PinE Zn_ribbon_recom RVT-GII COG3547 Neighborhood of RT #2 [1110075, 1116040] COG5361 COG5361 RVT-GII GIIM YnfA FUR Neighborhood of RT #3 [1275309, 1282658] PHA_synth_I YktD RVT-GII Esterase_phd RHH_8 Neighborhood of RT #4 [1318951, 1325112] MPP_PPP_family RVT-GII GIIM integrase_gron integrase_gron Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 145835-146668 bp Ori: ANY82213.1 Feature: domain Description: COG3293 Location: 145853-146213 bp Feature: domain Description: COG3293 Location: 14 5853-14 6213 bp Feature: domain Description: COG3293 Location: 146225-146645 bp Feature: domain Description: COG3293 Location: 14 6225-14 664 5 bp Feature: gene Location: 146683-146922 bp Ori: ANY82214.1 Feature: domain Description: DUF772 Location: 146716-146824 bp Feature: domain Description: DUF772 Location: 14 6716-14 6824 bp Feature: gene Location: 146950-147804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146953-147409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 6953-14 74 09 bp Feature: gene Location: 148194-150260 bp Ori: ANY82215.1 Feature: domain Description: PinE Location: 148239-148905 bp Feature: domain Description: PinE Location: 14 8239-14 8905 bp Feature: domain Description: Zn_ribbon_recom Location: 149172-149313 bp Feature: domain Description: Zn_ribbon_recom Location: 14 9172-14 9313 bp Feature: gene Location: 150281-150925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150692-150926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150692-150926 bp Feature: gene Location: 151027-151410 bp Feature: gene Location: 152009-153046 bp Ori: ANY82217.1 Feature: domain Description: COG3547 Location: 152117-152984 bp Feature: domain Description: COG354 7 Location: 152117-152984 bp Feature: gene Location: 1110075-1111484 bp Ori: ANY83013.1 Feature: domain Description: COG5361 Location: 1110135-1111479 bp Feature: domain Description: COG5361 Location: 1110135-11114 79 bp Feature: gene Location: 1111499-1112932 bp Ori: ANY83014.1 Feature: domain Description: COG5361 Location: 1111571-1112921 bp Feature: domain Description: COG5361 Location: 1111571-1112921 bp Feature: gene Location: 1113590-1114930 bp Ori: ANY83015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1113890-1114553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1113890-1114 553 bp Feature: domain Description: GIIM Note: maturase Location: 1114625-1114835 bp Feature: domain Description: GIIM Note: maturase Location: 1114 625-1114 835 bp Feature: gene Location: 1115286-1115627 bp Feature: domain Description: YnfA Location: 1115322-1115622 bp Feature: domain Description: YnfA Location: 1115322-1115622 bp Feature: gene Location: 1115642-1116040 bp Ori: ANY83016.1 Feature: domain Description: FUR Location: 1115645-1115993 bp Feature: domain Description: FUR Location: 111564 5-1115993 bp Feature: gene Location: 1275309-1277129 bp Ori: ANY83142.1 Feature: domain Description: PHA_synth_I Location: 1275528-1277121 bp Feature: domain Description: PHA_synth_I Location: 1275528-1277121 bp Feature: gene Location: 1277216-1278076 bp Ori: ANY83143.1 Feature: domain Description: YktD Location: 1277249-1277939 bp Feature: domain Description: YktD Location: 127724 9-1277939 bp Feature: gene Location: 1278901-1280230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279195-1279261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279195-1279261 bp Feature: gene Location: 1280874-1282142 bp Ori: ANY83144.1 Feature: domain Description: Esterase_phd Location: 1281333-1281906 bp Feature: domain Description: Esterase_phd Location: 1281333-1281906 bp Feature: gene Location: 1282239-1282658 bp Ori: ANY83145.1 Feature: domain Description: RHH_8 Location: 1282281-1282632 bp Feature: domain Description: RHH_8 Location: 1282281-1282632 bp Feature: gene Location: 1318951-1320102 bp Ori: ANY83172.1 Feature: domain Description: MPP_PPP_family Location: 1319224-1319869 bp Feature: domain Description: MPP_PPP_family Location: 1319224 -1319869 bp Feature: gene Location: 1320483-1320686 bp Feature: gene Location: 1321283-1322614 bp Ori: ANY83174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321574-1322237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321574 -1322237 bp Feature: domain Description: GIIM Note: maturase Location: 1322309-1322519 bp Feature: domain Description: GIIM Note: maturase Location: 1322309-1322519 bp Feature: gene Location: 1323010-1323885 bp Ori: ANY83175.1 Feature: domain Description: integrase_gron Location: 1323049-1323568 bp Feature: domain Description: integrase_gron Location: 132304 9-1323568 bp Feature: domain Description: integrase_gron Location: 1323619-1323850 bp Feature: domain Description: integrase_gron Location: 1323619-1323850 bp Feature: gene Location: 1323898-1325112 bp Ori: ANY83176.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1323931-1324204 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1323931-1324 204 bp Feature: domain Description: Y2_Tnp Location: 1324330-1324885 bp Feature: domain Description: Y2_Tnp Location: 1324 330-1324 885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), DUF772 (pfam05598), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), COG3547 (Transposase ), COG5361 (Uncharacterized conserved protein ), GIIM (pfam08388), YnfA (COG1742), FUR (pfam01475)
PHA_synth_I, YktD (COG3315), Esterase_phd (pfam10503), RHH_8 (pfam17723), MPP_PPP_family (cd00144), integrase_gron (TIGR02249), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: CP016620.1 Microvirga sp. V5/3M plasmid unnamed4, complete sequence (593709 bp)
Overview 1 RT 1: 44638-51220 bp Neighborhood of RT #1 [44638, 51252] COG5361 COG5361 COG5361 RVT-GII GIIM DUF3597 SRAP Feature: gene Location: 44638-46272 bp Ori: ANY84882.1 Feature: domain Description: COG5361 Location: 44779-45334 bp Feature: domain Description: COG5 361 Location: 44779-45 334 bp Feature: domain Description: COG5361 Location: 45403-46267 bp Feature: domain Description: COG5 361 Location: 45 403-46267 bp Feature: gene Location: 46344-47762 bp Ori: ANY84883.1 Feature: domain Description: COG5361 Location: 46380-47757 bp Feature: domain Description: COG5 361 Location: 46380-4775 7 bp Feature: gene Location: 48042-49373 bp Ori: ANY84884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48333-48996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48333-48996 bp Feature: domain Description: GIIM Note: maturase Location: 49068-49278 bp Feature: domain Description: GIIM Note: maturase Location: 49068-49278 bp Feature: gene Location: 50035-50484 bp Ori: ANY84885.1 Feature: domain Description: DUF3597 Location: 50044-50467 bp Feature: domain Description: DUF35 97 Location: 5 0044-5 0467 bp Feature: gene Location: 50602-51252 bp Ori: ANY84886.1 Feature: domain Description: SRAP Location: 50605-51220 bp Feature: domain Description: SRAP Location: 5 0605 -5 1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5361 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388), DUF3597 (pfam12200), SRAP (pfam02586)