myRT

myRT report for GCA_002741195.1_ASM274119v1

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Seq: CP024232.1 Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome (4872840 bp)
Overview 1 RT 1: 2161814-2166314 bp 2 RT 2: 4113986-4117198 bp Neighborhood of RT #1 [2161814, 2166337] InsE PHA02517 RVT-GII RVT-GII GIIM PHA02517 PRK10681 Neighborhood of RT #2 [4113986, 4117263] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2161814-2162140 bp Feature: domain Description: InsE Location: 2161817-2162138 bp Feature: domain Description: InsE Location: 21 61 81 7-21 621 38 bp Feature: gene Location: 2162140-2162619 bp Feature: domain Description: PHA02517 Location: 2162200-2162554 bp Feature: domain Description: PHA0251 7 Location: 21 62200-21 62554 bp Feature: gene Location: 2163211-2163939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2163484-2163931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 63484-21 63931 bp Feature: gene Location: 2164035-2164730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164041-2164212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 64041 -21 6421 2 bp Feature: domain Description: GIIM Note: maturase Location: 2164287-2164506 bp Feature: domain Description: GIIM Note: maturase Location: 21 64287-21 64506 bp Feature: gene Location: 2164907-2165293 bp Feature: domain Description: PHA02517 Location: 2164910-2165291 bp Feature: domain Description: PHA0251 7 Location: 21 6491 0-21 65291 bp Feature: gene Location: 2165555-2166337 bp Feature: domain Description: PRK10681 Location: 2165558-2166314 bp Feature: domain Description: PRK1 0681 Location: 21 65558-21 6631 4 bp Feature: gene Location: 4113986-4114156 bp Feature: gene Location: 4114184-4114600 bp Feature: domain Description: PHA02517 Location: 4114187-4114592 bp Feature: domain Description: PHA0251 7 Location: 41 1 41 87-41 1 4592 bp Feature: gene Location: 4114723-4116246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4114996-4115728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 4996-41 1 5728 bp Feature: domain Description: GIIM Note: maturase Location: 4115803-4116001 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 5803-41 1 6001 bp Feature: gene Location: 4116200-4116625 bp Feature: gene Location: 4116838-4117263 bp Feature: domain Description: PHA02517 Location: 4116859-4117198 bp Feature: domain Description: PHA0251 7 Location: 41 1 6859-41 1 71 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10681 (DNA-binding transcriptional repressor DeoR; Provisional)

Seq: CP024235.1 Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed3, complete sequence (62188 bp)
Overview 1 RT 1: 41251-45325 bp Neighborhood of RT #1 [41251, 45345] HTH_38 Tra8 PHA02517 RVT-GII RVT-GII GIIM PHA02517 PRK13742 Feature: gene Location: 41251-41751 bp Feature: domain Description: HTH_38 Location: 41260-41374 bp Feature: domain Description: HTH_38 Location: 412 60-41374 bp Feature: domain Description: Tra8 Location: 41410-41716 bp Feature: domain Description: Tra8 Location: 41410-41716 bp Feature: gene Location: 41882-42307 bp Feature: domain Description: PHA02517 Location: 41906-42242 bp Feature: domain Description: PHA02 517 Location: 41906-42 2 42 bp Feature: gene Location: 42899-43627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43172-43619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43172 -43619 bp Feature: gene Location: 43723-44418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43729-43900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4372 9-43900 bp Feature: domain Description: GIIM Note: maturase Location: 43975-44194 bp Feature: domain Description: GIIM Note: maturase Location: 43975-44194 bp Feature: gene Location: 44583-44786 bp Feature: domain Description: PHA02517 Location: 44586-44784 bp Feature: domain Description: PHA02 517 Location: 44586-44784 bp Feature: gene Location: 44917-45345 bp Feature: domain Description: PRK13742 Location: 44989-45325 bp Feature: domain Description: PRK13742 Location: 44989-4532 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK13742 (replication initiation protein RepE)

Seq: CP024237.1 Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed5, complete sequence (152713 bp)
Overview 1 RT 1: 123306-127006 bp Neighborhood of RT #1 [123306, 127041] PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 123306-123434 bp Feature: gene Location: 123482-123763 bp Feature: domain Description: PHA02517 Location: 123488-123698 bp Feature: domain Description: PHA02517 Location: 123 488-123 698 bp Feature: gene Location: 124355-125878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124628-125360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124628-1253 60 bp Feature: domain Description: GIIM Note: maturase Location: 125435-125633 bp Feature: domain Description: GIIM Note: maturase Location: 12543 5-12563 3 bp Feature: gene Location: 126055-126441 bp Feature: domain Description: PHA02517 Location: 126058-126439 bp Feature: domain Description: PHA02517 Location: 126058-12643 9 bp Feature: gene Location: 126598-127041 bp Feature: domain Description: COG3547 Location: 126604-127006 bp Feature: domain Description: COG3 547 Location: 126604-127006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )